Acad9
Gene Detail

Symbol

Name
ID

Acad9
acyl-Coenzyme A dehydrogenase family, member 9
MGI:1914272

Synonyms

2600017P15Rik, C630012L17Rik, NPD002

Feature Type

protein coding gene

Genetic Map

Chromosome 3
17.41 cM, cytoband B
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr3:36066000-36092857 bp, + strand From Ensembl annotation of GRCm38   26858 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate
homology

HomoloGene:8539  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Acad9

Human
homologs

Human Homolog		ACAD9, acyl-CoA dehydrogenase family, member 9
NCBI Gene ID		28976
neXtProt AC		NX_Q9H845
Human Synonyms		NPD002
Human Chr (Location)		3q21.3; chr3:128879490-128913114 (+)  GRCh38
Disease Associations		(1) Diseases Associated with Human ACAD9

Mutations,
alleles, and
phenotypes

All mutations/alleles(5) : Gene trapped(1) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )

Interactions

Acad9 interacts with 343 markers (Mir1b, Mir7-1, Mir7-2, ...)

View All

Gene Ontology
(GO)
classifications

All GO classifications: (23 annotations)

Process	metabolic process, mitochondrial respiratory chain complex I assembly, ...
Component	dendrite, mitochondrion, ...
Function	2-methylhexanoyl-CoA dehydrogenase activity, 4-methyloctanoyl-CoA dehydrogenase activity, ...

External Resources: FuncBase

Expression

Literature Summary: (2 records)

Data Summary: Results (97)    Tissues (97)    Images (11)    Tissue x Stage Matrix (view)

Assay Type	Results
RNA in situ	96
RT-PCR	1

cDNA source data(121)
External Resources: Allen Institute   GEO   Expression Atlas

Molecular
reagents

All nucleic(123) cDNA(121) Primer pair(1) Other(1)
Microarray probesets(7)

Other database
links

Ensembl Gene Model	ENSMUSG00000027710 (Evidence)
Entrez Gene	229211 (Evidence)
UniGene	260997
DFCI	TC1643737, TC1614459, TC1599032, TC1572608
DoTS	DT.101167870, DT.101127515, DT.101402314, DT.111045083, DT.94406985, DT.492331, DT.97397667
EC	1.3.99.-
Consensus CDS Project	CCDS17310.1
International Mouse Knockout Project Status	Acad9

Sequences

Length	Strain/Species
genomic	ENSMUSG00000027710	Ensembl Gene Model | MGI Sequence Detail	26858	C57BL/6J
transcript	ENSMUST00000011492	Ensembl | MGI Sequence Detail	3913	Not Applicable
polypeptide	ENSMUSP00000011492	Ensembl | MGI Sequence Detail	625	Not Applicable

All sequences(63) RefSeq(4) UniProt(3)

Polymorphisms

SNPs within 2kb(197 from dbSNP Build 137)    SNPs within 2kb including multiple locations(199)

Protein-related
information

Resource	ID	Description
InterPro	IPR006089	Acyl-CoA dehydrogenase, conserved site
InterPro	IPR009100	Acyl-CoA dehydrogenase/oxidase
InterPro	IPR009075	Acyl-CoA dehydrogenase/oxidase C-terminal
InterPro	IPR013786	Acyl-CoA dehydrogenase/oxidase, N-terminal
InterPro	IPR006091	Acyl-CoA oxidase/dehydrogenase, central domain
Protein Ontology	PR:000003599	acyl-CoA dehydrogenase family member 9, mitochondrial

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)

Other
accession IDs

MGI:2444674