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Tbc1d2b
Gene Detail
Symbol

Name
ID
Tbc1d2b
TBC1 domain family, member 2B
MGI:1914266
Synonyms
1810061M12Rik, mKIAA1055
Feature Type
protein coding gene
Genetic Map
Chromosome 9
47.48 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr9:90202027-90270804 bp, - strand
From VEGA annotation of GRCm38

  68778 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:56694  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Tbc1d2b

Human
homologs
Human Homolog TBC1D2B, TBC1 domain family, member 2B
NCBI Gene ID 23102
neXtProt AC  NX_Q9UPU7
Human Chr (Location)  15q24.3-q25.1; chr15:77994985-78077652 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Gene trapped(2) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Tbc1d2b interacts with 320 markers (Mir1b, Mir15a, Mir15b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process regulation of Rab GTPase activity
Component cellular_component
Function GTPase activator activity, Rab GTPase activator activity
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (118)    Tissues (109)    Images (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 118
cDNA source data(17)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(17) cDNA(17)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000031688 (Evidence)
Ensembl Gene ModelENSMUSG00000037410 (Evidence)
Entrez Gene67016 (Evidence)
DFCITC1601825, TC1655851, TC1664948, TC1738570
DoTSDT.40185168, DT.491529, DT.94295043, DT.97412692
NIA Mouse Gene IndexU031178
Consensus CDS ProjectCCDS23401.1
International Mouse Knockout Project StatusTbc1d2b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031688 VEGA Gene Model | MGI Sequence Detail 68778 C57BL/6J ±  kb
transcript OTTMUST00000078503 VEGA | MGI Sequence Detail 5956 Not Applicable 
polypeptide OTTMUSP00000041747 VEGA | MGI Sequence Detail 965 Not Applicable 

For the selected sequences
All sequences(53) RefSeq(3) UniProt(4)
Polymorphisms
SNPs within 2kb(476 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001849 Pleckstrin homology domain
InterPro IPR011993 Pleckstrin homology-like domain
InterPro IPR000195 Rab-GTPase-TBC domain
Protein Ontology PR:000016111 TBC1 domain family member 2B
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(34)
Other
accession IDs
MGI:2143080, MGI:2143251, MGI:2143252, MGI:2143307

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory