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Trappc13 Gene Detail
Summary
  • Symbol
    Trappc13
  • Name
    trafficking protein particle complex 13
  • Synonyms
    2410002O22Rik, 2610524F24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914225
    NCBI Gene: 66975
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:104142149-104178469 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 56.28 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    568 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914225
protein coding gene Chr13:104142149-104178703 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020904
protein coding gene Chr13:106230082-106269122 (-)
A/J MGP_AJ_G0020855
protein coding gene Chr13:102097216-102133623 (-)
AKR/J MGP_AKRJ_G0020830
protein coding gene Chr13:105208137-105243936 (-)
BALB/cJ MGP_BALBcJ_G0020855
protein coding gene Chr13:102807111-102842571 (-)
C3H/HeJ MGP_C3HHeJ_G0020644
protein coding gene Chr13:104939322-104979720 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021289
protein coding gene Chr13:109426166-109464389 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018859
protein coding gene Chr13:97714233-97751144 (-)
CAST/EiJ MGP_CASTEiJ_G0020163
protein coding gene Chr13:104405569-104445122 (-)
CBA/J MGP_CBAJ_G0020606
protein coding gene Chr13:113669589-113713782 (-)
DBA/2J MGP_DBA2J_G0020730
protein coding gene Chr13:101862496-101899164 (-)
FVB/NJ MGP_FVBNJ_G0020712
protein coding gene Chr13:100561215-100597114 (-)
LP/J MGP_LPJ_G0020804
protein coding gene Chr13:106254691-106294490 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020740
protein coding gene Chr13:113838282-113878898 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021328
protein coding gene Chr13:104674601-104718025 (-)
PWK/PhJ MGP_PWKPhJ_G0019916
protein coding gene Chr13:100596101-100633679 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019738
protein coding gene Chr13:100865268-100914423 (-)
WSB/EiJ MGP_WSBEiJ_G0020221
protein coding gene Chr13:105147577-105185599 (-)



Homology
more
  • Human Ortholog
    TRAPPC13, trafficking protein particle complex 13
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TRAPPC13, trafficking protein particle complex 13
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C5orf44, SHLD3
  • Links
    NCBI Gene ID: 80006
    neXtProt AC: NX_A5PLN9
    UniProt: A5PLN9

  • Chr Location
    5q12.3; chr5:65624731-65666136 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021711 Ensembl Gene Model | MGI Sequence Detail 36321 C57BL/6J ±  kb
transcript ENSMUST00000022224 Ensembl | MGI Sequence Detail 2342 Not Applicable  
polypeptide ENSMUSP00000022224 Ensembl | MGI Sequence Detail 418 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR010378 Trafficking protein particle complex subunit 13
Molecular
Reagents
less
  • All nucleic 91
    cDNA 91

    Microarray probesets 8
Other
Accession IDs
less
MGI:1917155, MGI:2145247, MGI:2145341
References
more
  • Summaries
    All 27
    Phenotypes 6
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory