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Ssbp2
Gene Detail
 Symbol
Name
ID
Ssbp2
single-stranded DNA binding protein 2
MGI:1914220
Synonyms 1500004K09Rik, 2310079I02Rik, 9330163K02Rik, A830008M03Rik, Hspc116
Feature Type protein coding gene
Genetic Map
Chromosome 13
47.43 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr13:91460283-91703429 bp, + strand
From VEGA annotation of GRCm38

  243147 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:22724  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Ssbp2

Human
homologs
Human Homolog SSBP2, single-stranded DNA binding protein 2
NCBI Gene ID 23635
neXtProt AC  NX_P81877
Human Synonyms  HSPC116, SOSS-B2
Human Chr (Location)  5q14.1; chr5:81417360-81751253 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(1) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
 
Mice exhibit some perinatal lethality and premature death associated with increased incidence of lymphoma and carcinoma.
 
Interactions
Ssbp2 interacts with 378 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process regulation of transcription, DNA-templated, transcription, DNA-templated
Component cytoplasm, nucleus
Function DNA binding, protein binding, ...
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (229)    Tissues (66)    Images (42)
Theiler Stages: 15, 17, 19, 20, 22, 23, 24
Assay TypeResults
RNA in situ 229
cDNA source data(18)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(20) cDNA(20)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000024516 (Evidence)
Ensembl Gene ModelENSMUSG00000003992 (Evidence)
Entrez Gene66970 (Evidence)
Consensus CDS ProjectCCDS26676.1, CCDS26677.1
International Mouse Knockout Project StatusSsbp2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024516 VEGA Gene Model | MGI Sequence Detail 243147 C57BL/6J ±  kb
transcript OTTMUST00000060164 VEGA | MGI Sequence Detail 3957 Not Applicable 
polypeptide OTTMUSP00000043255 VEGA | MGI Sequence Detail 361 Not Applicable 

For the selected sequences
All sequences(69) RefSeq(18) UniProt(4)
Polymorphisms SNPs within 2kb(1961 from dbSNP Build 137)    SNPs within 2kb including multiple locations(1963)
Protein-related
information
ResourceIDDescription
InterPro IPR006594 LisH dimerisation motif
InterPro IPR008116 Sequence-specific single-strand DNA-binding protein
Protein Ontology PR:000015649 single-stranded DNA-binding protein 2
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(39)
Other
accession IDs
MGI:1923746, MGI:2145381, MGI:2145460, MGI:2442615, MGI:2442986

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory