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Edem3 Gene Detail
Summary
  • Symbol
    Edem3
  • Name
    ER degradation enhancer, mannosidase alpha-like 3
  • Synonyms
    2310050N11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914217
    NCBI Gene: 66967
  • Gene Overview
    MyGene.info: EDEM3
Location & Maps
more
  • Sequence Map
    Chr1:151755371-151822051 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      66681 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 64.34 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    EDEM3, ER degradation enhancing alpha-mannosidase like protein 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    EDEM3, ER degradation enhancing alpha-mannosidase like protein 3
    Orthology source: HGNC, HomoloGene
  • Synonyms
    C1orf22
  • Links
    NCBI Gene ID: 80267
    neXtProt AC: NX_Q9BZQ6

  • Chr Location
    1q25; chr1:184690491-184754907 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 11866
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: EDEM3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    9
  • Chemically induced (other)
    2
  • Gene trapped
    5
  • Targeted
    2
  • Genomic Mutations
    2 involving Edem3
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000049645 VEGA Gene Model | MGI Sequence Detail 66681 C57BL/6J ±  kb
transcript OTTMUST00000126472 VEGA | MGI Sequence Detail 3262 Not Applicable  
polypeptide OTTMUSP00000068383 VEGA | MGI Sequence Detail 947 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    580 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 3
References
more
  • Summaries
    All 27
    Gene Ontology 6
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory