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Fip1l1
Gene Detail
Symbol

Name
ID
Fip1l1
FIP1 like 1 (S. cerevisiae)
MGI:1914149
Synonyms
1300019H17Rik, Rje
Feature Type
protein coding gene
Genetic Map
Chromosome 5
39.51 cM, cytoband D
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr5:74535449-74598790 bp, + strand
From VEGA annotation of GRCm38

  63342 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:136254  Vertebrate Homology Class
1 mouse; 1 cattle; 1 dog; 1 chicken

Gene Tree: Fip1l1

Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(7) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Fip1l1 interacts with 269 markers (Mir7-2, Mir7b, Mir10a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process mRNA polyadenylation, mRNA processing
Component mRNA cleavage and polyadenylation specificity factor complex, nucleus
Function protein binding, RNA binding
External Resources: FuncBase
Expression
cDNA source data(7)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(7) cDNA(7)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000028601 (Evidence)
Ensembl Gene ModelENSMUSG00000029227 (Evidence)
Entrez Gene66899 (Evidence)
DFCITC1589414, TC1575878, TC1596040, TC1601975
DoTSDT.99858125, DT.490419, DT.101397368, DT.101397367
NIA Mouse Gene IndexU042645
Consensus CDS ProjectCCDS19346.1, CCDS51520.1, CCDS51521.1
International Mouse Knockout Project StatusFip1l1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000028601 VEGA Gene Model | MGI Sequence Detail 63342 C57BL/6J ±  kb
transcript OTTMUST00000070907 VEGA | MGI Sequence Detail 2140 Not Applicable 
polypeptide OTTMUSP00000036210 VEGA | MGI Sequence Detail 595 Not Applicable 

For the selected sequences
All sequences(76) RefSeq(14) UniProt(7)
Polymorphisms
SNPs within 2kb(324 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007854 Pre-mRNA polyadenylation factor Fip1
Protein Ontology PR:000007526 pre-mRNA 3'-end-processing factor FIP1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(32)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory