About   Help   FAQ
Pxdc1 Gene Detail
Summary
  • Symbol
    Pxdc1
  • Name
    PX domain containing 1
  • Synonyms
    1300014I06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914145
    NCBI Gene: 66895
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:34627840-34653133 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 14.16 cM, cytoband A4
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    308 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914145
protein coding gene Chr13:34627834-34653486 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020451
protein coding gene Chr13:32756288-32780855 (-)
A/J MGP_AJ_G0020405
protein coding gene Chr13:31772211-31796879 (-)
AKR/J MGP_AKRJ_G0020383
protein coding gene Chr13:32537676-32562301 (-)
BALB/cJ MGP_BALBcJ_G0020401
protein coding gene Chr13:31845782-31870400 (-)
C3H/HeJ MGP_C3HHeJ_G0020200
protein coding gene Chr13:32470604-32495310 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020834
protein coding gene Chr13:33820896-33845458 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018421
protein coding gene Chr13:30085007-30110196 (-)
CAST/EiJ MGP_CASTEiJ_G0019715
protein coding gene Chr13:32101773-32152454 (-)
CBA/J MGP_CBAJ_G0020161
protein coding gene Chr13:35301581-35326262 (-)
DBA/2J MGP_DBA2J_G0020283
protein coding gene Chr13:31313799-31338600 (-)
FVB/NJ MGP_FVBNJ_G0020262
protein coding gene Chr13:30876697-30901450 (-)
LP/J MGP_LPJ_G0020358
protein coding gene Chr13:32987620-33012292 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020292
protein coding gene Chr13:35500732-35525383 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020877
protein coding gene Chr13:32183213-32208022 (-)
PWK/PhJ MGP_PWKPhJ_G0019470
protein coding gene Chr13:31421060-31464003 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019297
protein coding gene Chr13:30800187-30855953 (-)
WSB/EiJ MGP_WSBEiJ_G0019777
protein coding gene Chr13:32549863-32574624 (-)



Homology
more
  • Human Ortholog
    PXDC1, PX domain containing 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PXDC1, PX domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C6orf145
  • Links
    NCBI Gene ID: 221749
    neXtProt AC: NX_Q5TGL8
    UniProt: Q5TGL8

  • Chr Location
    6p25.2; chr6:3722602-3752012 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    4
  • Genomic Mutations
    2 involving Pxdc1
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66895 NCBI Gene Model | MGI Sequence Detail 25294 C57BL/6J ±  kb
transcript NM_025831 RefSeq | MGI Sequence Detail 1872 C57BL/6  
polypeptide Q8JZU6 UniProt | EBI | MGI Sequence Detail 231 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 40
    cDNA 40

    Microarray probesets 4
References
more
  • Summaries
    All 34
    Gene Ontology 1
    Phenotypes 13
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
10/08/2019
MGI 6.14
The Jackson Laboratory