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Vps9d1 Gene Detail
Summary
  • Symbol
    Vps9d1
  • Name
    VPS9 domain containing 1
  • Synonyms
    1300018I17Rik, 2410004N05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914143
    NCBI Gene: 72325
  • Gene Overview
    MyGene.info: VPS9D1
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:123242356-123254222 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 72.09 cM, cytoband E2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    127 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914143
protein coding gene Chr8:123242356-123254348 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034249
protein coding gene Chr8:126844731-126857538 (-)
A/J MGP_AJ_G0034229
protein coding gene Chr8:121589651-121602525 (-)
AKR/J MGP_AKRJ_G0034156
protein coding gene Chr8:125119391-125131378 (-)
BALB/cJ MGP_BALBcJ_G0034222
protein coding gene Chr8:121798821-121810842 (-)
C3H/HeJ MGP_C3HHeJ_G0033933
protein coding gene Chr8:125822817-125835100 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034742
protein coding gene Chr8:131091195-131103187 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031684
protein coding gene Chr8:114408907-114420774 (-)
CAST/EiJ MGP_CASTEiJ_G0033261
protein coding gene Chr8:125903420-125915410 (-)
CBA/J MGP_CBAJ_G0033906
protein coding gene Chr8:135902595-135918309 (-)
DBA/2J MGP_DBA2J_G0034062
protein coding gene Chr8:120768187-120780179 (-)
FVB/NJ MGP_FVBNJ_G0034006
protein coding gene Chr8:119934572-119946573 (-)
LP/J MGP_LPJ_G0034152
protein coding gene Chr8:126976613-126988616 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034053
protein coding gene Chr8:138040389-138052410 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034761
protein coding gene Chr8:125336464-125348456 (-)
PWK/PhJ MGP_PWKPhJ_G0032962
protein coding gene Chr8:120598578-120610653 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032802
protein coding gene Chr8:124053328-124065236 (-)
WSB/EiJ MGP_WSBEiJ_G0033377
protein coding gene Chr8:126070906-126084881 (-)



Homology
more
  • Human Ortholog
    VPS9D1, VPS9 domain containing 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    VPS9D1, VPS9 domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ATP-BL, C16orf7
  • Links
    NCBI Gene ID: 9605
    neXtProt AC: NX_Q9Y2B5
    UniProt: Q9Y2B5

  • Chr Location
    16q24.3; chr16:89707133-89721046 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 21021
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: VPS9D1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 72325 NCBI Gene Model | MGI Sequence Detail 11867 C57BL/6J ±  kb
transcript NM_001310661 RefSeq | MGI Sequence Detail 2845 C57BL/6  
polypeptide Q8C190 UniProt | EBI | MGI Sequence Detail 649 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 42
    cDNA 42

    Microarray probesets 5
Other
Accession IDs
less
MGI:1919575
References
more
  • Summaries
    All 27
    Developmental Gene Expression 3
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:263646 Horiuchi K, et al., Impaired Spermatogenesis, Muscle, and Erythrocyte Function in U12 Intron Splicing-Defective Zrsr1 Mutant Mice. Cell Rep. 2018 Apr 3;23(1):143-155

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory