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Ncbp3 Gene Detail
Summary
  • Symbol
    Ncbp3
  • Name
    nuclear cap binding subunit 3
  • Synonyms
    1200014J11Rik, C130061O14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914124
    NCBI Gene: 66874
  • Alliance
Location & Maps
more
  • Sequence Map
    Chr11:73047783-73089317 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      41535 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 45.16 cM, cytoband B4
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    NCBP3, nuclear cap binding subunit 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    NCBP3, nuclear cap binding subunit 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C17orf85, ELG, HSA277841
  • Links
    NCBI Gene ID: 55421
    neXtProt AC: NX_Q53F19
    UniProt: Q53F19

  • Chr Location
    17p13.2; chr17:3806748-3846251 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 10231
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: NCBP3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    17 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000006118 VEGA Gene Model | MGI Sequence Detail 41535 C57BL/6J ±  kb
transcript OTTMUST00000013832 VEGA | MGI Sequence Detail 12106 Not Applicable  
polypeptide OTTMUSP00000006413 VEGA | MGI Sequence Detail 615 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    347 from dbSNP Build 142
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR019416 Nuclear cap-binding protein subunit 3
Molecular
Reagents
less
  • All nucleic 71
    cDNA 71

    Microarray probesets 6
Other
Accession IDs
less
MGI:2144640
References
more
  • Summaries
    All 42
    Gene Ontology 3
    Phenotypes 17
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:226985 Gebhardt A, et al., mRNA export through an additional cap-binding complex consisting of NCBP1 and NCBP3. Nat Commun. 2015;6:8192

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/28/2017
MGI 6.11
The Jackson Laboratory