0610009L18Rik Gene Detail

Summary

• Symbol
  0610009L18Rik
• Name
  RIKEN cDNA 0610009L18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914088
  NCBI Gene: 66838
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:120239504-120242016 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 84.07 cM, cytoband E2
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914088	lncRNA gene	Chr11:120239083-120242043 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0019495	protein coding gene	Chr11:124796655-124799167 (+)
A/J	MGP_AJ_G0019463	protein coding gene	Chr11:119255602-119258114 (+)
AKR/J	MGP_AKRJ_G0019433	protein coding gene	Chr11:122840123-122842635 (+)
BALB/cJ	MGP_BALBcJ_G0019438	protein coding gene	Chr11:119608284-119610796 (+)
C3H/HeJ	MGP_C3HHeJ_G0019244	protein coding gene	Chr11:123177171-123179683 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0019886	protein coding gene	Chr11:128581379-128583891 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017512	protein coding gene	Chr11:116246218-116248713 (+)
CAST/EiJ	MGP_CASTEiJ_G0018798	protein coding gene	Chr11:124652513-124655024 (+)
CBA/J	MGP_CBAJ_G0019215	protein coding gene	Chr11:133617043-133619555 (+)
DBA/2J	MGP_DBA2J_G0019327	protein coding gene	Chr11:118624569-118627081 (+)
FVB/NJ	MGP_FVBNJ_G0019319	protein coding gene	Chr11:118324861-118327415 (+)
LP/J	MGP_LPJ_G0019399	protein coding gene	Chr11:125107761-125110273 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0019352	protein coding gene	Chr11:132456715-132460231 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0019926	protein coding gene	Chr11:123524536-123529196 (+)
PWK/PhJ	MGP_PWKPhJ_G0018564	protein coding gene	Chr11:120052667-120055173 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0018356	protein coding gene	Chr11:123288765-123291295 (+)
WSB/EiJ	MGP_WSBEiJ_G0018850	protein coding gene	Chr11:123516548-123519060 (+)

Homology

• Gene Tree
  0610009L18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  13
• Gene trapped
  11
• Targeted
  2
• Find Mice (IMSR)
  8 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  19

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000043644 (Evidence)
• NCBI Gene
  66838

Representative Sequences			Length	Strain/Species
genomic	66838	NCBI Gene Model | MGI Sequence Detail	2513	C57BL/6J
transcript	NR_038126	RefSeq | MGI Sequence Detail	619	C57BL/6
polypeptide	Q9CWA9	UniProt | EBI | MGI Sequence Detail	131	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 19

  cDNA 19

  
  

  Microarray probesets 1

References

• Summaries
  All 20

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for 0610009L18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106280	Chr11:120239508-120239608 (+)	54 bp
Tssr3756	Chr11:120240104-120240116 (+)	606 bp
Tssr3757	Chr11:120241097-120241112 (+)	1,601 bp