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Grtp1 Gene Detail
Summary
  • Symbol
    Grtp1
  • Name
    GH regulated TBC protein 1
  • Synonyms
    5430401C05Rik, Tbc1d6
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914040
    NCBI Gene: 66790
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:13176869-13200652 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 5.73 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    266 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914040
protein coding gene Chr8:13172022-13200652 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033374
protein coding gene Chr8:10503342-10527978 (-)
A/J MGP_AJ_G0033354
protein coding gene Chr8:10129816-10153376 (-)
AKR/J MGP_AKRJ_G0033285
protein coding gene Chr8:10395056-10423032 (-)
BALB/cJ MGP_BALBcJ_G0033355
protein coding gene Chr8:10262786-10286379 (-)
C3H/HeJ MGP_C3HHeJ_G0033068
protein coding gene Chr8:10611609-10636316 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033867
protein coding gene Chr8:10871227-10901526 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030836
protein coding gene Chr8:9633107-9656628 (-)
CAST/EiJ MGP_CASTEiJ_G0032390
protein coding gene Chr8:10362023-10387431 (-)
CBA/J MGP_CBAJ_G0033041
protein coding gene Chr8:11323535-11348509 (-)
DBA/2J MGP_DBA2J_G0033194
protein coding gene Chr8:10079809-10103590 (-)
FVB/NJ MGP_FVBNJ_G0033143
protein coding gene Chr8:10091537-10116496 (-)
LP/J MGP_LPJ_G0033288
protein coding gene Chr8:10417272-10442430 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033177
protein coding gene Chr8:11567330-11592286 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033884
protein coding gene Chr8:10459122-10483560 (-)
PWK/PhJ MGP_PWKPhJ_G0032103
protein coding gene Chr8:10127771-10152010 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031945
protein coding gene Chr8:10351821-10381309 (-)
WSB/EiJ MGP_WSBEiJ_G0032506
protein coding gene Chr8:10490836-10515818 (-)



Homology
more
  • Human Ortholog
    GRTP1, growth hormone regulated TBC protein 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    GRTP1, growth hormone regulated TBC protein 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    TBC1D6
  • Links
    NCBI Gene ID: 79774
    neXtProt AC: NX_Q5TC63
    UniProt: Q5TC63

  • Chr Location
    13q34; chr13:113324164-113364158 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 66790 NCBI Gene Model | MGI Sequence Detail 23784 C57BL/6J ±  kb
    transcript NM_001368858 RefSeq | MGI Sequence Detail 1361 C57BL/6  
    polypeptide Q9D3N8 UniProt | EBI | MGI Sequence Detail 359 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 44
      cDNA 43
      Primer pair 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2142862
    References
    more
    • Summaries
      All 35
      Developmental Gene Expression 6
      Gene Ontology 2
      Phenotypes 7
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    03/13/2019
    MGI 6.13
    The Jackson Laboratory