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Cfap36 Gene Detail
Summary
  • Symbol
    Cfap36
  • Name
    cilia and flagella associated protein 36
  • Synonyms
    4931428D14Rik, Ccdc104
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913994
    NCBI Gene: 216618
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:29221532-29247409 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 16.46 cM, cytoband A4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    152 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913994
protein coding gene Chr11:29218918-29247409 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018105
protein coding gene Chr11:27218891-27244666 (-)
A/J MGP_AJ_G0018077
protein coding gene Chr11:26226831-26253735 (-)
AKR/J MGP_AKRJ_G0018042
protein coding gene Chr11:27075909-27102843 (-)
BALB/cJ MGP_BALBcJ_G0018045
protein coding gene Chr11:26418076-26449614 (-)
C3H/HeJ MGP_C3HHeJ_G0017859
protein coding gene Chr11:26984460-27015783 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018498
protein coding gene Chr11:28185487-28211214 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016155
protein coding gene Chr11:24870950-24897779 (-)
CAST/EiJ MGP_CASTEiJ_G0017421
protein coding gene Chr11:27033340-27058974 (-)
CBA/J MGP_CBAJ_G0017833
protein coding gene Chr11:29487936-29513174 (-)
DBA/2J MGP_DBA2J_G0017943
protein coding gene Chr11:26080988-26107174 (-)
FVB/NJ MGP_FVBNJ_G0017935
protein coding gene Chr11:25882935-25909521 (-)
LP/J MGP_LPJ_G0018015
protein coding gene Chr11:27470889-27501079 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0017961
protein coding gene Chr11:30548693-30575040 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018538
protein coding gene Chr11:27183743-27211545 (-)
PWK/PhJ MGP_PWKPhJ_G0017203
protein coding gene Chr11:26174037-26200728 (-)
SPRET/EiJ MGP_SPRETEiJ_G0016998
protein coding gene Chr11:26861256-26890995 (-)
WSB/EiJ MGP_WSBEiJ_G0017474
protein coding gene Chr11:26873424-26900209 (-)



Homology
more
  • Human Ortholog
    CFAP36, cilia and flagella associated protein 36
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CFAP36, cilia and flagella associated protein 36
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BARTL1, CCDC104
  • Links
    NCBI Gene ID: 112942
    neXtProt AC: NX_Q96G28
    UniProt: Q96G28

  • Chr Location
    2p16.1; chr2:55519595-55545080 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000020462 Ensembl Gene Model | MGI Sequence Detail 25878 C57BL/6J ±  kb
    transcript ENSMUST00000020754 Ensembl | MGI Sequence Detail 1664 Not Applicable  
    polypeptide ENSMUSP00000020754 Ensembl | MGI Sequence Detail 343 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 54
      Genomic 1
      cDNA 53

      Microarray probesets 3
    References
    more
    • Summaries
      All 32
      Developmental Gene Expression 1
      Gene Ontology 4
      Phenotypes 7
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:247391 Lokaj M, et al., The Interaction of CCDC104/BARTL1 with Arl3 and Implications for Ciliary Function. Structure. 2015 Nov 03;23(11):2122-32

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    10/08/2019
    MGI 6.14
    The Jackson Laboratory