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Cfap36
Gene Detail
Symbol

Name
ID
Cfap36
cilia and flagella associated protein 36
MGI:1913994
Synonyms
4931428D14Rik, Ccdc104
Feature Type
protein coding gene
Genetic Map
Chromosome 11
16.46 cM, cytoband A4
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:29221532-29247409 bp, - strand
From VEGA annotation of GRCm38

  25878 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:41646  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: CFAP36
Gene Tree: Cfap36

Human
homologs
CFAP36, cilia and flagella associated protein 36
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 112942
neXtProt AC: NX_Q96G28

Human Synonyms: CCDC104

Human Chr (Location): 2p16.1; chr2:55519595-55545080 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(2) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Cfap36 interacts with 63 markers (Mir22, Mir27a, Mir27b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process biological_process
Component cell projection, cytoplasm, ...
Function protein binding
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (12)    Tissues (6)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 12
cDNA source data(50)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase cfap36    NEW 
Molecular
reagents
All nucleic(53) Genomic(1) cDNA(52)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000005323 (Evidence)
Ensembl Gene Model ENSMUSG00000020462 (Evidence)
Entrez Gene 216618 (Evidence)
UniGene 128663
DFCI TC1576988
DoTS DT.491850, DT.101317844
NIA Mouse Gene Index U032599
Consensus CDS Project CCDS24493.1
International Mouse Phenotyping Consortium Status Cfap36
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005323 VEGA Gene Model | MGI Sequence Detail 25878 C57BL/6J ±  kb
transcript OTTMUST00000011861 VEGA | MGI Sequence Detail 1664 Not Applicable 
polypeptide OTTMUSP00000005492 VEGA | MGI Sequence Detail 343 Not Applicable 

For the selected sequences
All sequences(35) RefSeq(4) UniProt(3)
Polymorphisms
SNPs within 2kb(157 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR023379 ADP-ribosylation factor-like 2-binding protein, domain
Protein Ontology PR:000029309 coiled-coil domain-containing protein 104
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:193640 Lo JC, et al., RAB-like 2 has an essential role in male fertility, sperm intra-flagellar transport, and tail assembly. PLoS Genet. 2012;8(10):e1002969
All references(30)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory