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Ccdc96 Gene Detail
Summary
  • Symbol
    Ccdc96
  • Name
    coiled-coil domain containing 96
  • Synonyms
    4921513E08Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913967
    NCBI Gene: 66717
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:36484588-36488171 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 19.14 cM, cytoband B2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    16 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913967
protein coding gene Chr5:36484588-36488172 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029490
protein coding gene Chr5:34820667-34824251 (+)
A/J MGP_AJ_G0029457
protein coding gene Chr5:33678439-33682025 (+)
AKR/J MGP_AKRJ_G0029406
protein coding gene Chr5:34946506-34950092 (+)
BALB/cJ MGP_BALBcJ_G0029467
protein coding gene Chr5:34187642-34191228 (+)
C3H/HeJ MGP_C3HHeJ_G0029189
protein coding gene Chr5:34968592-34972178 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029921
protein coding gene Chr5:36730790-36734374 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027158
protein coding gene Chr5:31422311-31426233 (+)
CAST/EiJ MGP_CASTEiJ_G0028598
protein coding gene Chr5:34090695-34094291 (+)
CBA/J MGP_CBAJ_G0029157
protein coding gene Chr5:37610049-37613635 (+)
DBA/2J MGP_DBA2J_G0029305
protein coding gene Chr5:33816565-33820151 (+)
FVB/NJ MGP_FVBNJ_G0029264
protein coding gene Chr5:33296021-33299607 (+)
LP/J MGP_LPJ_G0029390
protein coding gene Chr5:35271592-35275176 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029294
protein coding gene Chr5:38365824-38369410 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029954
protein coding gene Chr5:34449421-34453007 (+)
PWK/PhJ MGP_PWKPhJ_G0028323
protein coding gene Chr5:32993494-32997078 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028154
protein coding gene Chr5:33921108-33924667 (+)
WSB/EiJ MGP_WSBEiJ_G0028679
protein coding gene Chr5:34534464-34538048 (+)



Homology
more
  • Human Ortholog
    CCDC96, coiled-coil domain containing 96
  • Vertebrate Orthologs
    8
  • Human Ortholog
    CCDC96, coiled-coil domain containing 96
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 257236
    neXtProt AC: NX_Q2M329
    UniProt: Q2M329

  • Chr Location
    4p16.1; chr4:7040849-7043001 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    21 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66717 NCBI Gene Model | MGI Sequence Detail 3584 C57BL/6J ±  kb
transcript NM_025725 RefSeq | MGI Sequence Detail 3584 C57BL/6  
polypeptide Q9CR92 UniProt | EBI | MGI Sequence Detail 584 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 18
    cDNA 18

    Microarray probesets 5
References
more
  • Summaries
    All 42
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 1
    Phenotypes 21
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory