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Ccer1 Gene Detail
Summary
  • Symbol
    Ccer1
  • Name
    coiled-coil glutamate-rich protein 1
  • Synonyms
    4921510H08Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913966
    NCBI Gene: 66716
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:97693059-97694923 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 50.38 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    31 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913966
protein coding gene Chr10:97693059-97694926 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017680
protein coding gene Chr10:99440029-99441896 (+)
A/J MGP_AJ_G0017659
protein coding gene Chr10:95862897-95864764 (+)
AKR/J MGP_AKRJ_G0017619
protein coding gene Chr10:98584698-98586565 (+)
BALB/cJ MGP_BALBcJ_G0017623
protein coding gene Chr10:96158140-96160007 (+)
C3H/HeJ MGP_C3HHeJ_G0017446
protein coding gene Chr10:98619833-98621700 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018079
protein coding gene Chr10:102874251-102876118 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015761
protein coding gene Chr10:91364009-91365863 (+)
CAST/EiJ MGP_CASTEiJ_G0017009
protein coding gene Chr10:98685511-98687379 (+)
CBA/J MGP_CBAJ_G0017415
protein coding gene Chr10:106910564-106912431 (+)
DBA/2J MGP_DBA2J_G0017521
protein coding gene Chr10:94928569-94930436 (+)
FVB/NJ MGP_FVBNJ_G0017514
protein coding gene Chr10:94187848-94189715 (+)
LP/J MGP_LPJ_G0017595
protein coding gene Chr10:100032038-100033905 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017544
protein coding gene Chr10:108087861-108089728 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018117
protein coding gene Chr10:98518948-98520815 (+)
PWK/PhJ MGP_PWKPhJ_G0016791
protein coding gene Chr10:95086974-95088881 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016580
protein coding gene Chr10:97395396-97397260 (+)
WSB/EiJ MGP_WSBEiJ_G0017069
protein coding gene Chr10:98529781-98531651 (+)



Homology
more
  • Human Ortholog
    CCER1, coiled-coil glutamate rich protein 1
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CCER1, coiled-coil glutamate rich protein 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C12orf12
  • Links
    NCBI Gene ID: 196477
    neXtProt AC: NX_Q8TC90
    UniProt: Q8TC90

  • Chr Location
    12q21.33; chr12:90952215-90955176 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Targeted
    1
  • Genomic Mutations
    1 involving Ccer1
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000047025 Ensembl Gene Model | MGI Sequence Detail 1865 C57BL/6J ±  kb
transcript ENSMUST00000060703 Ensembl | MGI Sequence Detail 1865 Not Applicable  
polypeptide ENSMUSP00000050554 Ensembl | MGI Sequence Detail 403 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000031767 coiled-coil domain-containing glutamate-rich protein 1
  • InterPro Domains
    IPR027889 Coiled-coil domain-containing glutamate-rich protein family 1
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 3
Other
Accession IDs
less
MGI:2143788
References
more
  • Summaries
    All 25
    Developmental Gene Expression 1
    Phenotypes 6
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory