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Chmp3
Gene Detail
Symbol

Name
ID
Chmp3
charged multivesicular body protein 3
MGI:1913950
Synonyms
25.1, 4921505F14Rik, 9130011K15Rik, CGI-49, D6Ertd286e, Vps24
Feature Type
protein coding gene
Genetic Map
Chromosome 6
32.17 cM, cytoband C3
Detailed Genetic Map ± 1 cM


Mapping data(6)
Sequence Map
Chr6:71543797-71582609 bp, + strand
From VEGA annotation of GRCm38

  38813 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:6368  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: ESCRT-3 complex, Chmp1/Chmp2/Chmp3 subunits
Gene Tree: Chmp3

Human
homologs
Human Homolog CHMP3, charged multivesicular body protein 3
NCBI Gene ID 51652
neXtProt AC  NX_Q9Y3E7
Human Synonyms  NEDF, VPS24
Human Chr (Location)  2p11.2; chr2:86503430-86563497 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(14) : Gene trapped(11) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Chmp3 interacts with 203 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (18 annotations)
Process cell cycle, cell division, ...
Component cytoplasm, early endosome, ...
Function phosphatidylinositol-4,5-bisphosphate binding
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (2)    Tissues (1)    Images (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 2
cDNA source data(137)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(139) cDNA(137) Primer pair(2)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000023566 (Evidence)
Ensembl Gene ModelENSMUSG00000053119 (Evidence)
Entrez Gene66700 (Evidence)
UniGene181278
DFCITC1572630, TC1591788, TC1652166
DoTSDT.101173291, DT.101377247, DT.110480326, DT.533450
Consensus CDS ProjectCCDS20232.1
International Mouse Knockout Project StatusChmp3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023566 VEGA Gene Model | MGI Sequence Detail 38813 C57BL/6J ±  kb
transcript OTTMUST00000057482 VEGA | MGI Sequence Detail 2654 Not Applicable 
polypeptide OTTMUSP00000027729 VEGA | MGI Sequence Detail 224 Not Applicable 

For the selected sequences
All sequences(50) RefSeq(8) UniProt(2)
Polymorphisms
SNPs within 2kb(156 from dbSNP Build 137)    SNPs within 2kb including multiple locations(160)
Protein-related
information
ResourceIDDescription
InterPro IPR005024 Snf7
Protein Ontology PR:000017325 charged multivesicular body protein 3
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(39)
Other
accession IDs
MGI:1098712, MGI:1914070

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory