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Msantd3 Gene Detail
Summary
  • Symbol
    Msantd3
  • Name
    Myb/SANT-like DNA-binding domain containing 3
  • Synonyms
    2410046L14Rik, 2810429P03Rik, 5730528L13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913915
    NCBI Gene: 66665
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:48539935-48561919 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 26.13 cM, cytoband B2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    106 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913915
protein coding gene Chr4:48539834-48565892 (.)
129S1/SvImJ MGP_129S1SvImJ_G0028275
protein coding gene Chr4:46961658-46984778 (+)
A/J MGP_AJ_G0028235
protein coding gene Chr4:45221821-45243944 (+)
AKR/J MGP_AKRJ_G0028184
protein coding gene Chr4:46387038-46411151 (+)
BALB/cJ MGP_BALBcJ_G0028254
protein coding gene Chr4:45332818-45354695 (+)
C3H/HeJ MGP_C3HHeJ_G0027975
protein coding gene Chr4:46942084-46964551 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028695
protein coding gene Chr4:48658640-48682016 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026004
protein coding gene Chr4:42561824-42583506 (+)
CAST/EiJ MGP_CASTEiJ_G0027414
protein coding gene Chr4:46542989-46566485 (+)
CBA/J MGP_CBAJ_G0027941
protein coding gene Chr4:50233961-50260321 (+)
DBA/2J MGP_DBA2J_G0028091
protein coding gene Chr4:45102548-45124277 (+)
FVB/NJ MGP_FVBNJ_G0028058
protein coding gene Chr4:44366623-44388255 (+)
LP/J MGP_LPJ_G0028190
protein coding gene Chr4:47024487-47048955 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028082
protein coding gene Chr4:53241308-53264403 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028730
protein coding gene Chr4:46571658-46593504 (+)
PWK/PhJ MGP_PWKPhJ_G0027139
protein coding gene Chr4:45228575-45258686 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026967
protein coding gene Chr4:46082484-46104810 (+)
WSB/EiJ MGP_WSBEiJ_G0027492
protein coding gene Chr4:46500625-46525058 (+)



Homology
more
  • Human Ortholog
    MSANTD3, Myb/SANT DNA binding domain containing 3
  • Vertebrate Orthologs
    6
  • Human Ortholog
    MSANTD3, Myb/SANT DNA binding domain containing 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C9orf30, L8
  • Links
    NCBI Gene ID: 91283
    neXtProt AC: NX_Q96H12
    UniProt: Q96H12

  • Chr Location
    9q31.1; chr9:100427213-100451734 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039693 Ensembl Gene Model | MGI Sequence Detail 21985 C57BL/6J ±  kb
transcript ENSMUST00000061135 Ensembl | MGI Sequence Detail 1589 Not Applicable  
polypeptide ENSMUSP00000056551 Ensembl | MGI Sequence Detail 275 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000032695 myb/SANT-like DNA-binding domain-containing protein 3
  • InterPro Domains
    IPR028002 Myb/SANT-like DNA-binding domain
    IPR026709 Myb/SANT-like DNA-binding domain-containing protein 3
Molecular
Reagents
less
  • All nucleic 24
    cDNA 24

    Microarray probesets 5
Other
Accession IDs
less
MGI:1919413, MGI:1922086
References
more
  • Summaries
    All 31
    Gene Ontology 3
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory