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Msantd3 Gene Detail
Summary
  • Symbol
    Msantd3
  • Name
    Myb/SANT-like DNA-binding domain containing 3
  • Synonyms
    2410046L14Rik, 2810429P03Rik, 5730528L13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913915
    NCBI Gene: 66665
  • Alliance
    genome feature page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:48539935-48561919 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 26.13 cM, cytoband B2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    530 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913915
 protein coding gene Chr4:48539532-48565892 (+)
129S1/SvImJ ENSMUSG00200002938
 protein coding gene Chr4:44611544-44633722 (+)
A/J ENSMUSG00195006424
 protein coding gene Chr4:45035059-45057045 (+)
AKR/J ENSMUSG00220002323
 protein coding gene Chr4:44762090-44784074 (+)
BALB/cJ ENSMUSG00180028459
 protein coding gene Chr4:44621702-44643687 (+)
C3H/HeJ ENSMUSG00175019874
 protein coding gene Chr4:44770953-44792937 (+)
C57BL/6NJ ENSMUSG00215020251
 protein coding gene Chr4:44568683-44590671 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026004
 protein coding gene Chr4:42561824-42583506 (+)
CAST/EiJ ENSTCUG00005035233
 protein coding gene Chr4:44825153-44847327 (+)
CBA/J ENSMUSG00210019383
 protein coding gene Chr4:44470590-44492570 (+)
DBA/2J ENSMUSG00185032320
 protein coding gene Chr4:44834099-44856079 (+)
FVB/NJ ENSMUSG00205015285
 protein coding gene Chr4:44130967-44152950 (+)
JF1/MsJ ENSUMUG00000019666
 protein coding gene Chr4:45068126-45090271 (+)
LP/J ENSMUSG00230041148
 protein coding gene Chr4:48406604-48428777 (+)
NOD/ShiLtJ ENSMUSG00190021540
 protein coding gene Chr4:44703430-44725411 (+)
NZO/HlLtJ ENSMUSG00225002690
 protein coding gene Chr4:53003935-53025917 (+)
PWK/PhJ ENSLUMG00010012488
 protein coding gene Chr4:44075149-44097322 (+)
SPRET/EiJ ENSMSPG00010009045
 protein coding gene Chr4:45004650-45026424 (+)
WSB/EiJ ENSIUOG00005004301
 protein coding gene Chr4:44452670-44474845 (+)



Homology
more
  • Human Ortholog
    MSANTD3, Myb/SANT DNA binding domain containing 3
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    MSANTD3, Myb/SANT DNA binding domain containing 3
  • Synonyms
    C9orf30, L8
  • Links
    NCBI Gene ID: 91283
    UniProt: Q96H12

  • Chr Location
    9q31.1; chr9:100426693-100451734 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    24
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039693 Ensembl Gene Model | MGI Sequence Detail 21985 C57BL/6J ±  kb
transcript ENSMUST00000064807 Ensembl | MGI Sequence Detail 1378 Not Applicable  
polypeptide ENSMUSP00000065785 Ensembl | MGI Sequence Detail 275 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 24
    cDNA 24

    Microarray probesets 5
Other
Accession IDs
less
MGI:1919413, MGI:1922086
References
more
  • Summaries
    All 33
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory