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Nsa2 Gene Detail
Summary
  • Symbol
    Nsa2
  • Name
    NSA2 ribosome biogenesis homolog
  • Synonyms
    5730427N09Rik, LNR42, Nsa2p, Yr29
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913883
    NCBI Gene: 59050
  • Gene Overview
    MyGene.info: NSA2
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:97129427-97137926 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 50.66 cM, cytoband D1
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    56 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913883
protein coding gene Chr13:97129424-97137937 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020857
protein coding gene Chr13:98726267-98734535 (-)
A/J MGP_AJ_G0020811
protein coding gene Chr13:94991241-95000500 (-)
AKR/J MGP_AKRJ_G0020785
protein coding gene Chr13:97883040-97893272 (-)
BALB/cJ MGP_BALBcJ_G0020808
protein coding gene Chr13:95675881-95684221 (-)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0021243
protein coding gene Chr13:101703404-101712605 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018813
protein coding gene Chr13:90754690-90762793 (-)
CAST/EiJ MGP_CASTEiJ_G0020119
protein coding gene Chr13:96919159-96928625 (-)
CBA/J MGP_CBAJ_G0020560
protein coding gene Chr13:105762838-105773657 (-)
DBA/2J MGP_DBA2J_G0020685
protein coding gene Chr13:94744416-94753059 (-)
FVB/NJ MGP_FVBNJ_G0020666
protein coding gene Chr13:93511778-93520432 (-)
LP/J MGP_LPJ_G0020760
protein coding gene Chr13:98834313-98844309 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020694
protein coding gene Chr13:106108514-106116759 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021284
protein coding gene Chr13:97306968-97317918 (-)
PWK/PhJ MGP_PWKPhJ_G0019871
protein coding gene Chr13:93524215-93533096 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019695
protein coding gene Chr13:93589388-93599782 (-)
WSB/EiJ MGP_WSBEiJ_G0020176
protein coding gene Chr13:97761530-97771918 (-)



Homology
more
  • Human Ortholog
    NSA2, NSA2, ribosome biogenesis homolog
  • Vertebrate Orthologs
    10
  • Human Ortholog
    NSA2, NSA2, ribosome biogenesis homolog
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CDK105, HCLG1, HCL-G1, HUSSY29, HUSSY-29, TINP1
  • Links
    NCBI Gene ID: 10412
    neXtProt AC: NX_O95478
    UniProt: O95478

  • Chr Location
    5q13.3; chr5:74765429-74776912 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 5844
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: NSA2
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 59050 NCBI Gene Model | MGI Sequence Detail 8500 C57BL/6J ±  kb
transcript NM_021552 RefSeq | MGI Sequence Detail 2686 C57BL/6  
polypeptide Q9CR47 UniProt | EBI | MGI Sequence Detail 260 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 21
    cDNA 21

    Microarray probesets 7
Other
Accession IDs
less
MGI:1926221
References
more
  • Summaries
    All 30
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 5
  • Earliest
    J:28008 Harrison SM, et al., Isolation of novel tissue-specific genes from cDNA libraries representing the individual tissue constituents of the gastrulating mouse embryo. Development. 1995 Aug;121(8):2479-89
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory