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Ogfod2 Gene Detail
Summary
  • Symbol
    Ogfod2
  • Name
    2-oxoglutarate and iron-dependent oxygenase domain containing 2
  • Synonyms
    1300006G11Rik, 5730405M13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913877
    NCBI Gene: 66627
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:124250384-124253544 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 63.39 cM, cytoband F
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    39 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913877
 protein coding gene Chr5:124250360-124253546 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030088
 protein coding gene Chr5:127897296-127900060 (+)
A/J MGP_AJ_G0030053
 protein coding gene Chr5:122578891-122581662 (+)
AKR/J MGP_AKRJ_G0029989
 protein coding gene Chr5:126525942-126529119 (+)
BALB/cJ MGP_BALBcJ_G0030064
 protein coding gene Chr5:123914811-123917979 (+)
C3H/HeJ MGP_C3HHeJ_G0029781
 protein coding gene Chr5:127142500-127145668 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030517
 protein coding gene Chr5:132857195-132859959 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027743
 protein coding gene Chr5:117115185-117118326 (+)
CAST/EiJ MGP_CASTEiJ_G0029190
 protein coding gene Chr5:126256334-126259088 (+)
CBA/J MGP_CBAJ_G0029751
 protein coding gene Chr5:138079995-138083173 (+)
DBA/2J MGP_DBA2J_G0029901
 protein coding gene Chr5:122602097-122604870 (+)
FVB/NJ MGP_FVBNJ_G0029857
 protein coding gene Chr5:121633967-121637142 (+)
LP/J MGP_LPJ_G0029990
 protein coding gene Chr5:128449447-128452615 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029888
 protein coding gene Chr5:141670182-141672946 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030558
 protein coding gene Chr5:126147707-126150875 (+)
PWK/PhJ MGP_PWKPhJ_G0028904
 protein coding gene Chr5:121413814-121416982 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028741
 protein coding gene Chr5:123793345-123796509 (+)
WSB/EiJ MGP_WSBEiJ_G0029265
 protein coding gene Chr5:126819150-126822329 (+)



Homology
more
  • Human Ortholog
    OGFOD2, 2-oxoglutarate and iron dependent oxygenase domain containing 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    OGFOD2, 2-oxoglutarate and iron dependent oxygenase domain containing 2
  • Links
    NCBI Gene ID: 79676
    neXtProt AC: NX_Q6N063
    UniProt: Q6N063

  • Chr Location
    12q24.31; chr12:122974580-122980043 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    710
  • Tissues
    2
  • cDNA Data
    42
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66627 NCBI Gene Model | MGI Sequence Detail 3161 C57BL/6J ±  kb
transcript NM_025671 RefSeq | MGI Sequence Detail 1569 C57BL/6  
polypeptide Q9CQ04 UniProt | EBI | MGI Sequence Detail 349 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 44
    cDNA 42
    Primer pair 1
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:1922017, MGI:2141083, MGI:2141230
References
more
  • Summaries
    All 36
    Developmental Gene Expression 2
    Gene Ontology 2
    Phenotypes 9
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:312811 Modzelewski AJ, et al., A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development. Cell. 2021 Oct 28;184(22):5541-5558.e22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory