About   Help   FAQ
Snx9
Gene Detail
 Symbol
Name
ID
Snx9
sorting nexin 9
MGI:1913866
Synonyms SDP1, SH3PX1
Feature Type protein coding gene
Genetic Map
Chromosome 17
3.51 cM, cytoband A1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr17:5841380-5930711 bp, + strand
From NCBI annotation of GRCm38

  89332 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:49454  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: sorting nexin, Snx9 type
Gene Tree: Snx9

Human
homologs
Human Homolog SNX9, sorting nexin 9
NCBI Gene ID 51429
neXtProt AC  NX_Q9Y5X1
Human Synonyms  SDP1, SH3PX1, SH3PXD3A, WISP
Human Chr (Location)  6q25.1-q26; chr6:157716046-157945077 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(55) : Gene trapped(53) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Snx9 interacts with 81 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (42 annotations)
Process cell cycle, cell division, ...
Component cell, cell projection, ...
Function 1-phosphatidylinositol binding, lipid binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (4)    Tissues (2)    Images (2)
Theiler Stages: 23
Assay TypeResults
RNA in situ 4
cDNA source data(93)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(94) cDNA(93) Other(1)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000002365 (Evidence)
Entrez Gene66616 (Evidence)
UniGene89515
DFCITC1578287, TC1607149
DoTSDT.492541
NIA Mouse Gene IndexU037368, U367800
PDB2ENM
Consensus CDS ProjectCCDS57041.1
International Mouse Knockout Project StatusSnx9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 66616 NCBI Gene Model | MGI Sequence Detail 89332 C57BL/6J ±  kb
transcript NM_025664 RefSeq | MGI Sequence Detail 2078 NMRI 
polypeptide Q91VH2 UniProt | EBI | MGI Sequence Detail 595 Not Applicable 

For the selected sequences
All sequences(41) RefSeq(4) UniProt(4)
Polymorphisms SNPs within 2kb(392 from dbSNP Build 137)    SNPs within 2kb including multiple locations(414)
Protein-related
information
ResourceIDDescription
InterPro IPR001683 Phox homologous domain
InterPro IPR019497 Sorting nexin protein, WASP-binding domain
InterPro IPR014536 Sorting nexin, Snx9 type
InterPro IPR001452 Src homology-3 domain
Protein Ontology PR:000015388 sorting nexin-9
Graphical View of Protein Domain Structure
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(37)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
09/16/2014
MGI 5.19
The Jackson Laboratory