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Snx9 Gene Detail
Summary
  • Symbol
    Snx9
  • Name
    sorting nexin 9
  • Synonyms
    SDP1, SH3PX1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913866
    NCBI Gene: 66616
  • Gene Overview
    MyGene.info: SNX9
Location & Maps
more
  • Sequence Map
    Chr17:5841380-5930711 bp, + strand
  • From NCBI annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      89332 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    SNX9, sorting nexin 9
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SNX9, sorting nexin 9
    Orthology source: HGNC, HomoloGene
  • Synonyms
    SDP1, SH3PX1, SH3PXD3A, WISP
  • Links
    NCBI Gene ID: 51429
    neXtProt AC: NX_Q9Y5X1

  • Chr Location
    6q25.3; chr6:157716046-157945077 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    55
  • Gene trapped
    53
  • Targeted
    2
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 66616 NCBI Gene Model | MGI Sequence Detail 89332 C57BL/6J ±  kb
transcript NM_025664 RefSeq | MGI Sequence Detail 2078 NMRI  
polypeptide Q91VH2 UniProt | EBI | MGI Sequence Detail 595 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    370 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 94
    cDNA 93
    Other 1

    Microarray probesets 4
References
more
  • Summaries
    All 32
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/19/2016
MGI 6.03
The Jackson Laboratory