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Snx9 Gene Detail
Summary
  • Symbol
    Snx9
  • Name
    sorting nexin 9
  • Synonyms
    SDP1, SH3PX1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913866
    NCBI Gene: 66616
  • Gene Overview
    MyGene.info: SNX9
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:5841380-5931956 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 3.51 cM, cytoband A1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    373 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913866
protein coding gene Chr17:5841328-5931956 (.)
129S1/SvImJ MGP_129S1SvImJ_G0023107
protein coding gene Chr17:2990449-3078739 (+)
A/J MGP_AJ_G0023077
protein coding gene Chr17:2926752-3015485 (+)
AKR/J MGP_AKRJ_G0023043
protein coding gene Chr17:2985725-3077373 (+)
BALB/cJ MGP_BALBcJ_G0023080
protein coding gene Chr17:2887109-2984495 (+)
C3H/HeJ MGP_C3HHeJ_G0022840
protein coding gene Chr17:3068463-3119981 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023525
protein coding gene Chr17:3147371-3240613 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021025
protein coding gene Chr17:2730946-2804844 (+)
CAST/EiJ MGP_CASTEiJ_G0022358
protein coding gene Chr17:3039336-3119391 (+)
CBA/J MGP_CBAJ_G0022807
protein coding gene Chr17:3296253-3408455 (+)
DBA/2J MGP_DBA2J_G0022942
protein coding gene Chr17:2781101-2872171 (+)
FVB/NJ MGP_FVBNJ_G0022915
protein coding gene Chr17:2822860-2906914 (+)
LP/J MGP_LPJ_G0023010
protein coding gene Chr17:3124602-3221321 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022936
protein coding gene Chr17:3132013-3228043 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023544
protein coding gene Chr17:3018735-3110646 (+)
PWK/PhJ MGP_PWKPhJ_G0022102
protein coding gene Chr17:2858968-2944451 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021930
protein coding gene Chr17:2990478-3053586 (+)
WSB/EiJ MGP_WSBEiJ_G0022408
protein coding gene Chr17:2981752-3071183 (+)



Homology
more
  • Human Ortholog
    SNX9, sorting nexin 9
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SNX9, sorting nexin 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SDP1, SH3PX1, SH3PXD3A, WISP
  • Links
    NCBI Gene ID: 51429
    neXtProt AC: NX_Q9Y5X1
    UniProt: Q9Y5X1

  • Chr Location
    6q25.3; chr6:157716046-157945077 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66616 NCBI Gene Model | MGI Sequence Detail 90577 C57BL/6J ±  kb
transcript NM_025664 RefSeq | MGI Sequence Detail 2078 NMRI  
polypeptide Q91VH2 UniProt | EBI | MGI Sequence Detail 595 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 95
    cDNA 94
    Other 1

    Microarray probesets 4
References
more
  • Summaries
    All 33
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:248446 Nandez R, et al., A role of OCRL in clathrin-coated pit dynamics and uncoating revealed by studies of Lowe syndrome cells. Elife. 2014 Aug 8;3:e02975

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory