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Gtf3a Gene Detail
Summary
  • Symbol
    Gtf3a
  • Name
    general transcription factor III A
  • Synonyms
    2010015D03Rik, 2610111I01Rik, 5330403M05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913846
    NCBI Gene: 66596
  • Gene Overview
    MyGene.info: GTF3A
Location & Maps
more
  • Sequence Map
    Chr5:146948657-146955614 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser
  • Download
    Sequence
      6958 bp   ±  kb flank

  • Genome Browsers
    VEGA | Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 86.57 cM, cytoband G2
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    GTF3A, general transcription factor IIIA
  • Vertebrate Orthologs
    10
  • Human Ortholog
    GTF3A, general transcription factor IIIA
    Orthology source: HomoloGene, HGNC
  • Synonyms
    AP2, TFIIIA
  • Links
    NCBI Gene ID: 2971
    neXtProt AC: NX_Q92664

  • Chr Location
    13q12.3-q13.1; chr13:27424544-27435709 (+)  GRCh38.p2
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    10
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    139
  • Tissues
    55
  • cDNA Data
    73
  • Literature Summary
    4
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024608 VEGA Gene Model | MGI Sequence Detail 6958 C57BL/6J ±  kb
transcript OTTMUST00000060491 VEGA | MGI Sequence Detail 1298 Not Applicable  
polypeptide OTTMUSP00000029507 VEGA | MGI Sequence Detail 364 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    135 from dbSNP Build 142
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000008324 transcription factor IIIA
  • InterPro Domains
    IPR007087 Zinc finger, C2H2
    IPR015880 Zinc finger, C2H2-like
    IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular
Reagents
less
  • All nucleic 76
    cDNA 75
    Primer pair 1

    Microarray probesets 6
Other
Accession IDs
less
MGI:1919733, MGI:1923924
References
more
  • Summaries
    All 34
    Developmental Gene Expression 4
    Gene Ontology 5
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/13/2016
MGI 6.05 		The Jackson Laboratory