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Gdpd1 Gene Detail
Summary
  • Symbol
    Gdpd1
  • Name
    glycerophosphodiester phosphodiesterase domain containing 1
  • Synonyms
    2610020H15Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913819
    NCBI Gene: 66569
Location & Maps
more
  • Sequence Map
    Chr11:87033867-87074062 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      40196 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 51.87 cM, cytoband C
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    GDPD1, glycerophosphodiester phosphodiesterase domain containing 1
  • Vertebrate Orthologs
    8
  • Human Ortholog
    GDPD1, glycerophosphodiester phosphodiesterase domain containing 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    GDE4
  • Links
    NCBI Gene ID: 284161
    neXtProt AC: NX_Q8N9F7

  • Chr Location
    17q22; chr17:59220467-59275970 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    11 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Targeted
    3
  • Genomic Mutations
    2 involving Gdpd1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000001223 VEGA Gene Model | MGI Sequence Detail 40196 C57BL/6J ±  kb
transcript OTTMUST00000002446 VEGA | MGI Sequence Detail 2336 Not Applicable  
polypeptide OTTMUSP00000001206 VEGA | MGI Sequence Detail 314 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    133 from dbSNP Build 142
Protein
Information
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  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000032682 glycerophosphodiester phosphodiesterase domain-containing protein 1
  • EC
  • InterPro Domains
    IPR030395 Glycerophosphodiester phosphodiesterase domain
    IPR004129 Glycerophosphoryl diester phosphodiesterase
    IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
Molecular
Reagents
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  • All nucleic 13
    cDNA 13

    Microarray probesets 5
References
more
  • Summaries
    All 28
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 11
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:217869 Ohshima N, et al., New Members of the Mammalian Glycerophosphodiester Phosphodiesterase Family: GDE4 AND GDE7 PRODUCE LYSOPHOSPHATIDIC ACID BY LYSOPHOSPHOLIPASE D ACTIVITY. J Biol Chem. 2015 Feb 13;290(7):4260-71

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory