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Fam107b
Gene Detail
Symbol

Name
ID
Fam107b
family with sequence similarity 107, member B
MGI:1913790
Synonyms
3110001A13Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 2
2.05 cM, cytoband A1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr2:3613758-3782142 bp, + strand
From VEGA annotation of GRCm38

  168385 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:75316  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: FAM107B
Gene Tree: Fam107b

Human
homologs
FAM107B, family with sequence similarity 107, member B
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 83641
neXtProt AC: NX_Q9H098

Human Synonyms: C10orf45

Human Chr (Location): 10p13; chr10:14518557-14774897 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Gene trapped(2) Targeted(1)
Incidental mutations (data from APF )
 
Mice homozygous for a knock-out allele exhibit impaired hearing.
 
Interactions
Fam107b interacts with 303 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process sensory perception of sound
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (30)    Tissues (18)    Images (6)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 30
cDNA source data(159)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase fam107b    NEW 
Molecular
reagents
All nucleic(159) cDNA(159)
Microarray probesets(6)
Other database
links
VEGA Gene Model OTTMUSG00000010781 (Evidence)
Ensembl Gene Model ENSMUSG00000026655 (Evidence)
Entrez Gene 66540 (Evidence)
UniGene 277864
DFCI TC1573594
DoTS DT.101174413, DT.102536415, DT.493853, DT.94361717
NIA Mouse Gene Index U001332
Consensus CDS Project CCDS15655.1
International Mouse Phenotyping Consortium Status Fam107b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000010781 VEGA Gene Model | MGI Sequence Detail 168385 C57BL/6J ±  kb
transcript OTTMUST00000111148 VEGA | MGI Sequence Detail 861 Not Applicable 
polypeptide OTTMUSP00000062134 VEGA | MGI Sequence Detail 153 Not Applicable 

For the selected sequences
All sequences(68) RefSeq(10) UniProt(5)
Polymorphisms
SNPs within 2kb(1144 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009533 Protein of unknown function DUF1151
Protein Ontology PR:000032346 protein FAM107B
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:200082 White JK, et al., Genome-wide generation and systematic phenotyping of knockout mice reveals new roles for many genes. Cell. 2013 Jul 18;154(2):452-64
All references(35)
Other
accession IDs
MGI:2138800, MGI:2138810, MGI:2138843

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory