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Rep15 Gene Detail
Summary
  • Symbol
    Rep15
  • Name
    RAB15 effector protein
  • Synonyms
    2210417D09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913782
    NCBI Gene: 66532
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:146934035-146935016 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 77.70 cM, cytoband G3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    54 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913782
 protein coding gene Chr6:146934035-146935743 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031495
 protein coding gene Chr6:152070364-152073162 (+)
A/J MGP_AJ_G0031470
 protein coding gene Chr6:146037922-146040228 (+)
AKR/J MGP_AKRJ_G0031398
 protein coding gene Chr6:150382759-150384420 (+)
BALB/cJ MGP_BALBcJ_G0031478
 protein coding gene Chr6:145797805-145799773 (+)
C3H/HeJ MGP_C3HHeJ_G0031199
 protein coding gene Chr6:150426278-150428706 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031939
 protein coding gene Chr6:156113381-156115042 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029063
 protein coding gene Chr6:144775927-144777415 (+)
CAST/EiJ MGP_CASTEiJ_G0030568
 protein coding gene Chr6:150070485-150072147 (+)
CBA/J MGP_CBAJ_G0031159
 protein coding gene Chr6:162077375-162079036 (+)
DBA/2J MGP_DBA2J_G0031315
 protein coding gene Chr6:144819352-144821013 (+)
FVB/NJ MGP_FVBNJ_G0031267
 protein coding gene Chr6:143558525-143561067 (+)
LP/J MGP_LPJ_G0031401
 protein coding gene Chr6:152149732-152151381 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031307
 protein coding gene Chr6:165796982-165798670 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031972
 protein coding gene Chr6:150201862-150203534 (+)
PWK/PhJ MGP_PWKPhJ_G0030294
 protein coding gene Chr6:143341666-143343330 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030118
 protein coding gene Chr6:148356104-148357567 (+)
WSB/EiJ MGP_WSBEiJ_G0030661
 protein coding gene Chr6:150824521-150829046 (+)



Homology
more
  • Human Ortholog
    REP15, RAB15 effector protein
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    REP15, RAB15 effector protein
  • Synonyms
    RAB15EP
  • Links
    NCBI Gene ID: 387849
    neXtProt AC: NX_Q6BDI9
    UniProt: Q6BDI9

  • Chr Location
    12p11.22; chr12:27696447-27697596 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 66532 NCBI Gene Model | MGI Sequence Detail 982 C57BL/6J ±  kb
    transcript NM_025620 RefSeq | MGI Sequence Detail 982 C57BL/6  
    polypeptide Q9D7T1 UniProt | EBI | MGI Sequence Detail 230 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 7
      cDNA 7

      Microarray probesets 2
    References
    more
    • Summaries
      All 26
      Gene Ontology 4
      Phenotypes 6
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory