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Ubxn6 Gene Detail
Summary
  • Symbol
    Ubxn6
  • Name
    UBX domain protein 6
  • Synonyms
    1200008L11Rik, 2210415J11Rik, Ubxd1, Ubxdc2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913780
    NCBI Gene: 66530
  • Gene Overview
    MyGene.info: UBXN6
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:56067045-56075028 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 29.14 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    20 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913780
protein coding gene Chr17:56067045-56079328 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023910
protein coding gene Chr17:57704685-57712668 (-)
A/J MGP_AJ_G0023870
protein coding gene Chr17:56143556-56151539 (-)
AKR/J MGP_AKRJ_G0023839
protein coding gene Chr17:56827016-56834999 (-)
BALB/cJ MGP_BALBcJ_G0023871
protein coding gene Chr17:55978705-55986688 (-)
C3H/HeJ MGP_C3HHeJ_G0023634
protein coding gene Chr17:57532326-57540309 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024315
protein coding gene Chr17:59994827-60002810 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021762
protein coding gene Chr17:52657049-52664926 (-)
CAST/EiJ MGP_CASTEiJ_G0023117
protein coding gene Chr17:57850409-57858380 (-)
CBA/J MGP_CBAJ_G0023611
protein coding gene Chr17:62286868-62294851 (-)
DBA/2J MGP_DBA2J_G0023739
protein coding gene Chr17:54873210-54881193 (-)
FVB/NJ MGP_FVBNJ_G0023705
protein coding gene Chr17:54393069-54401052 (-)
LP/J MGP_LPJ_G0023819
protein coding gene Chr17:58416098-58424081 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023732
protein coding gene Chr17:61843860-61851843 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024360
protein coding gene Chr17:57200570-57208553 (-)
PWK/PhJ MGP_PWKPhJ_G0022862
protein coding gene Chr17:54216308-54224456 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022674
protein coding gene Chr17:53972334-53980343 (-)
WSB/EiJ MGP_WSBEiJ_G0023181
protein coding gene Chr17:57818273-57826256 (-)



Homology
more
  • Human Ortholog
    UBXN6, UBX domain protein 6
  • Vertebrate Orthologs
    10
  • Human Ortholog
    UBXN6, UBX domain protein 6
    Orthology source: HomoloGene, HGNC
  • Synonyms
    UBXD1, UBXDC2
  • Links
    NCBI Gene ID: 80700
    neXtProt AC: NX_Q9BZV1
    UniProt: Q9BZV1

  • Chr Location
    19p13.3; chr19:4445006-4458759 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 11538
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: UBXN6
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000019578 Ensembl Gene Model | MGI Sequence Detail 7984 C57BL/6J ±  kb
transcript ENSMUST00000019722 Ensembl | MGI Sequence Detail 2949 Not Applicable  
polypeptide ENSMUSP00000019722 Ensembl | MGI Sequence Detail 442 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 3
Other
Accession IDs
less
MGI:1923525, MGI:2146996
References
more
  • Summaries
    All 27
    Gene Ontology 2
    Phenotypes 4
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory