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Smim30 Gene Detail
Summary
  • Symbol
    Smim30
  • Name
    small integral membrane protein 30
  • Synonyms
    2610001J05Rik, C79299
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913770
    NCBI Gene: 66520
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:13867734-13871517 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 5.80 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    31 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913770
protein coding gene Chr6:13867734-13871517 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030462
protein coding gene Chr6:10962274-10966057 (-)
A/J MGP_AJ_G0030435
protein coding gene Chr6:10535694-10539477 (-)
AKR/J MGP_AKRJ_G0030362
protein coding gene Chr6:10889548-10893334 (-)
BALB/cJ MGP_BALBcJ_G0030444
protein coding gene Chr6:10524648-10528431 (-)
C3H/HeJ MGP_C3HHeJ_G0030158
protein coding gene Chr6:10799750-10803533 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030899
protein coding gene Chr6:11356623-11360406 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028110
protein coding gene Chr6:9711513-9715353 (-)
CAST/EiJ MGP_CASTEiJ_G0029560
protein coding gene Chr6:10650721-10654519 (-)
CBA/J MGP_CBAJ_G0030136
protein coding gene Chr6:11654471-11658254 (-)
DBA/2J MGP_DBA2J_G0030280
protein coding gene Chr6:10457620-10461403 (-)
FVB/NJ MGP_FVBNJ_G0030234
protein coding gene Chr6:10360774-10364559 (-)
LP/J MGP_LPJ_G0030367
protein coding gene Chr6:10907168-10910951 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030270
protein coding gene Chr6:12456665-12460429 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030929
protein coding gene Chr6:10780017-10783802 (-)
PWK/PhJ MGP_PWKPhJ_G0029274
protein coding gene Chr6:10151954-10155770 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029110
protein coding gene Chr6:10647804-10651554 (-)
WSB/EiJ MGP_WSBEiJ_G0029636
protein coding gene Chr6:10721624-10725409 (-)



Homology
more
  • Human Ortholog
    SMIM30, small integral membrane protein 30
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMIM30, small integral membrane protein 30
  • Synonyms
    LINC00998
  • Links
    NCBI Gene ID: 401397
    UniProt: A4D0T7

  • Chr Location
    7q31.1; chr7:113116718-113118582 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 66520 NCBI Gene Model | MGI Sequence Detail 3784 C57BL/6J ±  kb
transcript NM_001352887 RefSeq | MGI Sequence Detail 3177 C57BL/6  
polypeptide NP_001339816 RefSeq | MGI Sequence Detail 59 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR031742 Protein of unknown function DUF4730
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 6
Other
Accession IDs
less
MGI:2141749
References
more
  • Summaries
    All 22
    Phenotypes 2
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/19/2021
MGI 6.17
The Jackson Laboratory