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Cmss1 Gene Detail
Summary
  • Symbol
    Cmss1
  • Name
    cms small ribosomal subunit 1
  • Synonyms
    1110001A06Rik, 2610528E23Rik, 4930572F24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913747
    NCBI Gene: 66497
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:57302000-57606864 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 34.22 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2793 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913747
protein coding gene Chr16:57302000-57606867 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022898
protein coding gene Chr16:56453391-56760370 (-)
A/J MGP_AJ_G0022865
protein coding gene Chr16:54031134-54336582 (-)
AKR/J MGP_AKRJ_G0022837
protein coding gene Chr16:55743789-56047493 (-)
BALB/cJ MGP_BALBcJ_G0022865
protein coding gene Chr16:54137149-54442816 (-)
C3H/HeJ MGP_C3HHeJ_G0022628
protein coding gene Chr16:55936140-56237337 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023313
protein coding gene Chr16:58018368-58335488 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020824
protein coding gene Chr16:53683101-53980894 (-)
CAST/EiJ MGP_CASTEiJ_G0022155
protein coding gene Chr16:56309949-56631693 (-)
CBA/J MGP_CBAJ_G0022601
protein coding gene Chr16:60370622-60694928 (-)
DBA/2J MGP_DBA2J_G0022733
protein coding gene Chr16:53768045-54069165 (-)
FVB/NJ MGP_FVBNJ_G0022708
protein coding gene Chr16:53539547-53841631 (-)
LP/J MGP_LPJ_G0022800
protein coding gene Chr16:56263837-56562017 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022726
protein coding gene Chr16:60707356-61013502 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023328
protein coding gene Chr16:55886819-56192947 (-)
PWK/PhJ MGP_PWKPhJ_G0021894
protein coding gene Chr16:54088678-54391719 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021724
protein coding gene Chr16:55667036-55988488 (-)
WSB/EiJ MGP_WSBEiJ_G0022199
protein coding gene Chr16:55931588-56237837 (-)



Homology
more
  • Human Ortholog
    CMSS1, cms1 ribosomal small subunit homolog
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CMSS1, cms1 ribosomal small subunit homolog
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C3orf26
  • Links
    NCBI Gene ID: 84319
    neXtProt AC: NX_Q9BQ75
    UniProt: Q9BQ75

  • Chr Location
    3q12.1; chr3:99817834-100178632 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 11979
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CMSS1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022748 Ensembl Gene Model | MGI Sequence Detail 304865 C57BL/6J ±  kb
transcript ENSMUST00000114371 Ensembl | MGI Sequence Detail 1150 Not Applicable  
polypeptide ENSMUSP00000110011 Ensembl | MGI Sequence Detail 276 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
    IPR032704 Protein Cms1
Molecular
Reagents
less
  • All nucleic 38
    cDNA 38

    Microarray probesets 6
Other
Accession IDs
less
MGI:1915793, MGI:1925303, MGI:2146594, MGI:2146597
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Phenotypes 11
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory