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Cmss1 Gene Detail
Summary
  • Symbol
    Cmss1
  • Name
    cms small ribosomal subunit 1
  • Synonyms
    1110001A06Rik, 2610528E23Rik, 4930572F24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913747
    NCBI Gene: 66497
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:57302000-57606864 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 34.22 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2793 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913747
protein coding gene Chr16:57301999-57606867 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022898
protein coding gene Chr16:56453391-56760370 (-)
A/J MGP_AJ_G0022865
protein coding gene Chr16:54031134-54336582 (-)
AKR/J MGP_AKRJ_G0022837
protein coding gene Chr16:55743789-56047493 (-)
BALB/cJ MGP_BALBcJ_G0022865
protein coding gene Chr16:54137149-54442816 (-)
C3H/HeJ MGP_C3HHeJ_G0022628
protein coding gene Chr16:55936140-56237337 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023313
protein coding gene Chr16:58018368-58335488 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020824
protein coding gene Chr16:53683101-53980894 (-)
CAST/EiJ MGP_CASTEiJ_G0022155
protein coding gene Chr16:56309949-56631693 (-)
CBA/J MGP_CBAJ_G0022601
protein coding gene Chr16:60370622-60694928 (-)
DBA/2J MGP_DBA2J_G0022733
protein coding gene Chr16:53768045-54069165 (-)
FVB/NJ MGP_FVBNJ_G0022708
protein coding gene Chr16:53539547-53841631 (-)
LP/J MGP_LPJ_G0022800
protein coding gene Chr16:56263837-56562017 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022726
protein coding gene Chr16:60707356-61013502 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023328
protein coding gene Chr16:55886819-56192947 (-)
PWK/PhJ MGP_PWKPhJ_G0021894
protein coding gene Chr16:54088678-54391719 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021724
protein coding gene Chr16:55667036-55988488 (-)
WSB/EiJ MGP_WSBEiJ_G0022199
protein coding gene Chr16:55931588-56237837 (-)



Homology
more
  • Human Ortholog
    CMSS1, cms1 ribosomal small subunit homolog
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CMSS1, cms1 ribosomal small subunit homolog
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C3orf26
  • Links
    NCBI Gene ID: 84319
    neXtProt AC: NX_Q9BQ75
    UniProt: Q9BQ75

  • Chr Location
    3q12.1; chr3:99817834-100178632 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 11979
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CMSS1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022748 Ensembl Gene Model | MGI Sequence Detail 304865 C57BL/6J ±  kb
transcript ENSMUST00000114371 Ensembl | MGI Sequence Detail 1150 Not Applicable  
polypeptide ENSMUSP00000110011 Ensembl | MGI Sequence Detail 276 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
    IPR032704 Protein Cms1
Molecular
Reagents
less
  • All nucleic 38
    cDNA 38

    Microarray probesets 6
Other
Accession IDs
less
MGI:1915793, MGI:1925303, MGI:2146594, MGI:2146597
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Phenotypes 11
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/15/2020
MGI 6.15
The Jackson Laboratory