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Smim4 Gene Detail
Summary
  • Symbol
    Smim4
  • Name
    small integral membrane protein 4
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913737
    NCBI Gene: 66487
Location & Maps
more
  • Sequence Map
    Chr14:31088132-31128913 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      40782 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 19.09 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    SMIM4, small integral membrane protein 4
  • Human Ortholog
    SMIM4, small integral membrane protein 4
    Orthology source: HGNC
  • Synonyms
    C3orf78
  • Links
    NCBI Gene ID: 440957
    neXtProt AC: NX_Q8WVI0

  • Chr Location
    3p21.1; chr3:52535986-52540570 (+)  GRCh38.p2

  • HCOP
    human homology predictions: SMIM4
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    12
  • Gene trapped
    12
  • Incidental Mutations
    APF
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000057521 VEGA Gene Model | MGI Sequence Detail 40782 C57BL/6J ±  kb
transcript OTTMUST00000141438 VEGA | MGI Sequence Detail 1156 Not Applicable  
polypeptide OTTMUSP00000073923 VEGA | MGI Sequence Detail 102 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    130 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR028183 Uncharacterised protein family UPF0640
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 3
References
more
  • Summaries
    All 19
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory