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Rps21
Gene Detail
 Symbol
Name
ID
Rps21
ribosomal protein S21
MGI:1913731
Synonyms 1810049N11Rik, 2410030A14Rik
Feature Type protein coding gene
Genetic Map
Chromosome 2
102.78 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr2:180257377-180258445 bp, + strand
From VEGA annotation of GRCm38

  1069 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:90915  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 2 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: ribosomal protein S21e
Gene Tree: Rps21

Human
homologs
Human Homolog RPS21, ribosomal protein S21
NCBI Gene ID 6227
neXtProt AC  NX_P63220
Human Synonyms  HLDF, S21
Human Chr (Location)  20q13.3; chr20:62387065-62388520 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(33) : Gene trapped(30) Targeted(3)
Interactions
Rps21 interacts with 5 markers (Mir125a, Mir148a, Mir193b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (17 annotations)
Process endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA), endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA), ...
Component cytoplasm, cytosolic small ribosomal subunit, ...
Function poly(A) RNA binding, protein N-terminus binding, ...
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (4)    Tissues (4)   
Theiler Stages: 22, 28
Assay TypeResults
RT-PCR 4
cDNA source data(11)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(13) cDNA(12) Primer pair(1)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000016278 (Evidence)
Ensembl Gene ModelENSMUSG00000039001 (Evidence)
Entrez Gene66481 (Evidence)
DFCITC1573203, TC1720463
NIA Mouse Gene IndexU002953, U125321
Consensus CDS ProjectCCDS38376.1
International Mouse Knockout Project StatusRps21
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016278 VEGA Gene Model | MGI Sequence Detail 1069 C57BL/6J ±  kb
transcript OTTMUST00000039064 VEGA | MGI Sequence Detail 394 Not Applicable 
polypeptide OTTMUSP00000017450 VEGA | MGI Sequence Detail 83 Not Applicable 

For the selected sequences
All sequences(37) RefSeq(4) UniProt(1)
Polymorphisms SNPs within 2kb(19 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001931 Ribosomal protein S21e
InterPro IPR018279 Ribosomal protein S21e, conserved site
Protein Ontology PR:000014265 40S ribosomal protein S21
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)
Other
accession IDs
MGI:1923769

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory