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Taf12
Gene Detail
 Symbol
Name
ID
Taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor
MGI:1913714
Synonyms 20kDa, 2810422D08Rik, Taf2J
Feature Type protein coding gene
Genetic Map
Chromosome 4
65.09 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:132274375-132295766 bp, + strand
From VEGA annotation of GRCm38

  21392 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:68477  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 2 zebrafish

Gene Tree: Taf12

Human
homologs
Human Homolog TAF12, TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa
NCBI Gene ID 6883
neXtProt AC  NX_Q16514
Human Synonyms  TAF2J, TAFII20
Human Chr (Location)  1p35.3; chr1:28603096-28643101 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(61) : Gene trapped(60) Targeted(1)
Interactions
Taf12 interacts with 296 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (21 annotations)
Process DNA-templated transcription, initiation, histone H3 acetylation, ...
Component nucleus, PCAF complex, ...
Function DNA binding, histone acetyltransferase activity, ...
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
Literature Summary: (6 records)
Data Summary: Results (38)    Tissues (29)    Images (2)
Theiler Stages: 2, 3, 4, 5, 15, 17, 19, 23, 28
Assay TypeResults
RNA in situ 30
RT-PCR 8
cDNA source data(11)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(12) cDNA(11) Primer pair(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000011107 (Evidence)
Ensembl Gene ModelENSMUSG00000028899 (Evidence)
Entrez Gene66464 (Evidence)
DFCITC1577842
DoTSDT.491340, DT.94170932
NIA Mouse Gene IndexU004898
Consensus CDS ProjectCCDS18721.1
International Mouse Knockout Project StatusTaf12
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000011107 VEGA Gene Model | MGI Sequence Detail 21392 C57BL/6J ±  kb
transcript OTTMUST00000026005 VEGA | MGI Sequence Detail 777 Not Applicable 
polypeptide OTTMUSP00000011908 VEGA | MGI Sequence Detail 213 Not Applicable 

For the selected sequences
All sequences(45) RefSeq(12) UniProt(3)
Polymorphisms SNPs within 2kb(182 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009072 Histone-fold
InterPro IPR003228 Transcription initiation factor TFIID
Protein Ontology PR:000016017 transcription initiation factor TFIID subunit 12
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:181994 Kamileri I, et al., Defective transcription initiation causes postnatal growth failure in a mouse model of nucleotide excision repair (NER) progeria. Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):2995-3000
All references(41)
Other
accession IDs
MGI:2140602

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory