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Sys1 Gene Detail
Summary
  • Symbol
    Sys1
  • Name
    SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
  • Synonyms
    2610042O14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913710
    NCBI Gene: 66460
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:164456981-164479637 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 85.16 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    129 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913710
protein coding gene Chr2:164456964-164479638 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026852
protein coding gene Chr2:169900035-169923696 (+)
A/J MGP_AJ_G0026818
protein coding gene Chr2:162984768-163008540 (+)
AKR/J MGP_AKRJ_G0026789
protein coding gene Chr2:167825956-167848851 (+)
BALB/cJ MGP_BALBcJ_G0026827
protein coding gene Chr2:163346937-163370857 (+)
C3H/HeJ MGP_C3HHeJ_G0026569
protein coding gene Chr2:168181112-168203454 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027275
protein coding gene Chr2:174815640-174854137 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024645
protein coding gene Chr2:156396876-156418460 (+)
CAST/EiJ MGP_CASTEiJ_G0026029
protein coding gene Chr2:168602795-168625937 (+)
CBA/J MGP_CBAJ_G0026546
protein coding gene Chr2:181158549-181190227 (+)
DBA/2J MGP_DBA2J_G0026684
protein coding gene Chr2:162156807-162179290 (+)
FVB/NJ MGP_FVBNJ_G0026650
protein coding gene Chr2:160569037-160591486 (+)
LP/J MGP_LPJ_G0026787
protein coding gene Chr2:169981205-170005610 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026670
protein coding gene Chr2:184755896-184780973 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027331
protein coding gene Chr2:167729089-167752025 (+)
PWK/PhJ MGP_PWKPhJ_G0025764
protein coding gene Chr2:161732728-161756389 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025565
protein coding gene Chr2:166600478-166626238 (+)
WSB/EiJ MGP_WSBEiJ_G0026100
protein coding gene Chr2:168588019-168613189 (+)



Homology
more
  • Human Ortholog
    SYS1, SYS1 golgi trafficking protein
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SYS1, SYS1 golgi trafficking protein
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C20orf169, dJ453C12.4, dJ453C12.4.1
  • Links
    NCBI Gene ID: 90196
    neXtProt AC: NX_Q8N2H4
    UniProt: Q8N2H4

  • Chr Location
    20q13.12; chr20:45361937-45376802 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66460 NCBI Gene Model | MGI Sequence Detail 22657 C57BL/6J ±  kb
transcript NM_025575 RefSeq | MGI Sequence Detail 1623 C57BL/6  
polypeptide Q78S06 UniProt | EBI | MGI Sequence Detail 156 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 23
    cDNA 23

    Microarray probesets 10
Other
Accession IDs
less
MGI:2138874, MGI:2139531
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:255335 Tan GH, et al., PRRT2 deficiency induces paroxysmal kinesigenic dyskinesia by regulating synaptic transmission in cerebellum. Cell Res. 2018 Jan;28(1):90-110

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory