2810001G20Rik Gene Detail

Summary

• Symbol
  2810001G20Rik
• Name
  RIKEN cDNA 2810001G20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1913706
  NCBI Gene: 66456
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:63970310-63974085 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 39.66 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  246 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913706	lncRNA gene	Chr11:63969678-64052746 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002993	antisense lncRNA gene	Chr11:64224573-64228348 (+)
A/J	MGP_AJ_G0002970	antisense lncRNA gene	Chr11:61835058-61838833 (+)
AKR/J	MGP_AKRJ_G0002951	antisense lncRNA gene	Chr11:63750253-63754028 (+)
BALB/cJ	MGP_BALBcJ_G0002957	antisense lncRNA gene	Chr11:62102906-62106673 (+)
C3H/HeJ	MGP_C3HHeJ_G0002913	antisense lncRNA gene	Chr11:63704518-63708293 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003099	antisense lncRNA gene	Chr11:66196634-66200409 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002639	antisense lncRNA gene	Chr11:58882409-58886222 (+)
CAST/EiJ	MGP_CASTEiJ_G0002883	antisense lncRNA gene	Chr11:63895487-63899267 (+)
CBA/J	MGP_CBAJ_G0002910	antisense lncRNA gene	Chr11:69088917-69092691 (+)
DBA/2J	MGP_DBA2J_G0002917	antisense lncRNA gene	Chr11:61394869-61398642 (+)
FVB/NJ	MGP_FVBNJ_G0002935	antisense lncRNA gene	Chr11:61043025-61046795 (+)
LP/J	MGP_LPJ_G0002992	antisense lncRNA gene	Chr11:64758689-64762464 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002923	antisense lncRNA gene	Chr11:70024847-70028622 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003103	antisense lncRNA gene	Chr11:63906258-63910026 (+)
PWK/PhJ	MGP_PWKPhJ_G0002842	antisense lncRNA gene	Chr11:62004305-62008131 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002788	antisense lncRNA gene	Chr11:63764399-63768170 (+)
WSB/EiJ	MGP_WSBEiJ_G0002913	antisense lncRNA gene	Chr11:63522670-63526444 (+)

Homology

• Gene Tree
  2810001G20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Targeted
  1
• Genomic Mutations
  1 involving 2810001G20Rik
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  24

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  1

• Ensembl
  ENSMUSG00000087497 (Evidence)
• NCBI Gene
  66456

Representative Sequences			Length	Strain/Species
genomic	66456	NCBI Gene Model | MGI Sequence Detail	3776	C57BL/6J
transcript	NR_033780	RefSeq | MGI Sequence Detail	917	C57BL/6

Molecular
Reagents

• All nucleic 24

  cDNA 24

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:2144476

References

• Summaries
  All 17

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 2810001G20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102116	Chr11:63970304-63970353 (+)	19 bp
Tssr102117	Chr11:63970373-63970400 (+)	77 bp
Tssr102118	Chr11:63970439-63970450 (+)	135 bp