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Pcp4l1 Gene Detail
Summary
  • Symbol
    Pcp4l1
  • Name
    Purkinje cell protein 4-like 1
  • Synonyms
    1500036F01Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913675
    NCBI Gene: 66425
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:171173264-171196268 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 79.11 cM, cytoband H2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    283 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913675
protein coding gene Chr1:171173262-171196268 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016744
protein coding gene Chr1:176950687-176977260 (-)
A/J MGP_AJ_G0016724
protein coding gene Chr1:169755077-169778102 (-)
AKR/J MGP_AKRJ_G0016690
protein coding gene Chr1:174834268-174857261 (-)
BALB/cJ MGP_BALBcJ_G0016685
protein coding gene Chr1:170236815-170259753 (-)
C3H/HeJ MGP_C3HHeJ_G0016508
protein coding gene Chr1:175084974-175107944 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017146
protein coding gene Chr1:182833508-182857637 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014854
protein coding gene Chr1:161433185-161456826 (-)
CAST/EiJ MGP_CASTEiJ_G0016089
protein coding gene Chr1:174707514-174731257 (-)
CBA/J MGP_CBAJ_G0016483
protein coding gene Chr1:189344650-189369797 (-)
DBA/2J MGP_DBA2J_G0016590
protein coding gene Chr1:168593746-168616525 (-)
FVB/NJ MGP_FVBNJ_G0016586
protein coding gene Chr1:166942974-166965884 (-)
LP/J MGP_LPJ_G0016661
protein coding gene Chr1:178074588-178098570 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016613
protein coding gene Chr1:196634786-196658650 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017183
protein coding gene Chr1:174708747-174734010 (-)
PWK/PhJ MGP_PWKPhJ_G0015875
protein coding gene Chr1:167815288-167839193 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015659
protein coding gene Chr1:173499696-173519163 (-)
WSB/EiJ MGP_WSBEiJ_G0016151
protein coding gene Chr1:174826296-174851311 (-)



Homology
more
  • Human Ortholog
    PCP4L1, Purkinje cell protein 4 like 1
  • Vertebrate Orthologs
    2
  • Human Ortholog
    PCP4L1, Purkinje cell protein 4 like 1
    Orthology source: HGNC
  • Synonyms
    IQM1
  • Links
    NCBI Gene ID: 654790
    neXtProt AC: NX_A6NKN8
    UniProt: A6NKN8

  • Chr Location
    1q23.3; chr1:161258727-161285450 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66425 NCBI Gene Model | MGI Sequence Detail 23005 C57BL/6J ±  kb
transcript NM_025557 RefSeq | MGI Sequence Detail 1575 C57BL/6  
polypeptide Q6W8Q3 UniProt | EBI | MGI Sequence Detail 68 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 41
    cDNA 41

    Microarray probesets 2
References
more
  • Summaries
    All 31
    Developmental Gene Expression 3
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:205051 Miller JA, et al., Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates. Development. 2013 Nov;140(22):4633-44

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
11/12/2019
MGI 6.14
The Jackson Laboratory