About   Help   FAQ
Chmp4c Gene Detail
Summary
  • Symbol
    Chmp4c
  • Name
    charged multivesicular body protein 4C
  • Synonyms
    2010012P02Rik, 2210015K02Rik, 2310010I16Rik, chromatin modifying protein 4C, Snf7-3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913621
    NCBI Gene: 66371
  • Gene Overview
    MyGene.info: CHMP4C
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:10366973-10391005 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 2.63 cM, cytoband A2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    320 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913621
protein coding gene Chr3:10366907-10428856 (.)
129S1/SvImJ MGP_129S1SvImJ_G0027069
protein coding gene Chr3:7355387-7421652 (+)
A/J MGP_AJ_G0027033
protein coding gene Chr3:7498950-7560504 (+)
AKR/J MGP_AKRJ_G0027003
protein coding gene Chr3:7419208-7486623 (+)
BALB/cJ MGP_BALBcJ_G0027042
protein coding gene Chr3:7193917-7256731 (+)
C3H/HeJ MGP_C3HHeJ_G0026782
protein coding gene Chr3:7710934-7774995 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027486
protein coding gene Chr3:7984575-8054102 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024848
protein coding gene Chr3:6378565-6443798 (+)
CAST/EiJ MGP_CASTEiJ_G0026240
protein coding gene Chr3:7733561-7806536 (+)
CBA/J MGP_CBAJ_G0026760
protein coding gene Chr3:8008263-8081661 (+)
DBA/2J MGP_DBA2J_G0026896
protein coding gene Chr3:7060010-7123731 (+)
FVB/NJ MGP_FVBNJ_G0026863
protein coding gene Chr3:6990877-7053362 (+)
LP/J MGP_LPJ_G0027006
protein coding gene Chr3:7871940-7938762 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026884
protein coding gene Chr3:9034233-9101302 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027546
protein coding gene Chr3:7271820-7337255 (+)
PWK/PhJ MGP_PWKPhJ_G0025975
protein coding gene Chr3:7291859-7354301 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025778
protein coding gene Chr3:7410164-7478947 (+)
WSB/EiJ MGP_WSBEiJ_G0026311
protein coding gene Chr3:7299580-7366677 (+)



Homology
more
  • Human Ortholog
    CHMP4C, charged multivesicular body protein 4C
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CHMP4C, charged multivesicular body protein 4C
    Orthology source: HomoloGene, HGNC
  • Synonyms
    Shax3, SNF7-3, VPS32C
  • Links
    NCBI Gene ID: 92421
    neXtProt AC: NX_Q96CF2
    UniProt: Q96CF2

  • Chr Location
    8q21.13; chr8:81732453-81759515 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66371 NCBI Gene Model | MGI Sequence Detail 24033 C57BL/6J ±  kb
transcript NM_025519 RefSeq | MGI Sequence Detail 1790 C57BL/6  
polypeptide Q9D7F7 UniProt | EBI | MGI Sequence Detail 232 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 9
Other
Accession IDs
less
MGI:1919678, MGI:1921574
References
more
  • Summaries
    All 32
    Gene Ontology 3
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory