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Chmp4c Gene Detail
Summary
  • Symbol
    Chmp4c
  • Name
    charged multivesicular body protein 4C
  • Synonyms
    2010012P02Rik, 2210015K02Rik, 2310010I16Rik, chromatin modifying protein 4C, Snf7-3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913621
    NCBI Gene: 66371
  • Gene Overview
    MyGene.info: CHMP4C
Location & Maps
more
  • Sequence Map
    Chr3:10366907-10428856 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      61950 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 2.63 cM, cytoband A2
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    CHMP4C, charged multivesicular body protein 4C
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CHMP4C, charged multivesicular body protein 4C
    Orthology source: HGNC, HomoloGene
  • Synonyms
    Shax3, SNF7-3, VPS32C
  • Links
    NCBI Gene ID: 92421
    neXtProt AC: NX_Q96CF2

  • Chr Location
    8q21.13; chr8:81732453-81759515 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    12
  • Gene trapped
    8
  • Targeted
    4
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000027789 VEGA Gene Model | MGI Sequence Detail 61950 C57BL/6J ±  kb
transcript OTTMUST00000068769 VEGA | MGI Sequence Detail 6188 Not Applicable  
polypeptide OTTMUSP00000034830 VEGA | MGI Sequence Detail 232 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    585 from dbSNP Build 142
Protein
Information
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  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000005438 charged multivesicular body protein 4c
  • InterPro Domains
    IPR005024 Snf7 family
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 9
Other
Accession IDs
less
MGI:1919678, MGI:1921574
References
more
  • Summaries
    All 31
    Gene Ontology 3
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory