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Ergic3 Gene Detail
Summary
  • Symbol
    Ergic3
  • Name
    ERGIC and golgi 3
  • Synonyms
    2310015B14Rik, CGI-54, D2Ucla1, NY-BR-84, Sdbcag84
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913616
    NCBI Gene: 66366
  • Gene Overview
    MyGene.info: ERGIC3
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:156008045-156018279 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 77.32 cM, cytoband H2
  • Mapping Data
    8 experiments
Strain
Comparison
more
  • SNPs within 2kb
    149 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913616
protein coding gene Chr2:156008033-156018279 (.)
129S1/SvImJ MGP_129S1SvImJ_G0026752
protein coding gene Chr2:160865819-160875930 (+)
A/J MGP_AJ_G0026718
protein coding gene Chr2:154477963-154488247 (+)
AKR/J MGP_AKRJ_G0026689
protein coding gene Chr2:158960086-158970319 (+)
BALB/cJ MGP_BALBcJ_G0026727
protein coding gene Chr2:154774397-154784508 (+)
C3H/HeJ MGP_C3HHeJ_G0026470
protein coding gene Chr2:159325432-159335543 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027176
protein coding gene Chr2:165591728-165602000 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024546
protein coding gene Chr2:147972725-147983184 (+)
CAST/EiJ MGP_CASTEiJ_G0025931
protein coding gene Chr2:159647606-159657802 (+)
CBA/J MGP_CBAJ_G0026447
protein coding gene Chr2:171597966-171608077 (+)
DBA/2J MGP_DBA2J_G0026584
protein coding gene Chr2:153651241-153661471 (+)
FVB/NJ MGP_FVBNJ_G0026551
protein coding gene Chr2:152031171-152041282 (+)
LP/J MGP_LPJ_G0026689
protein coding gene Chr2:161007185-161017296 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026572
protein coding gene Chr2:175565366-175575477 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027232
protein coding gene Chr2:158843096-158853207 (+)
PWK/PhJ MGP_PWKPhJ_G0025665
protein coding gene Chr2:153155029-153165493 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025468
protein coding gene Chr2:157786453-157797953 (+)
WSB/EiJ MGP_WSBEiJ_G0026001
protein coding gene Chr2:159727249-159737358 (+)



Homology
more
  • Human Ortholog
    ERGIC3, ERGIC and golgi 3
  • Vertebrate Orthologs
    9
  • Human Ortholog
    ERGIC3, ERGIC and golgi 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C20orf47, C2orf47, CGI-54, dJ477O4.2, Erv46, NY-BR-84, PRO0989, SDBCAG84
  • Links
    NCBI Gene ID: 51614
    neXtProt AC: NX_Q9Y282
    UniProt: Q9Y282

  • Chr Location
    20q11.22; chr20:35542029-35557634 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000005881 Ensembl Gene Model | MGI Sequence Detail 10235 C57BL/6J ±  kb
transcript ENSMUST00000088650 Ensembl | MGI Sequence Detail 1349 Not Applicable  
polypeptide ENSMUSP00000086025 Ensembl | MGI Sequence Detail 394 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    3 Sequences
  • InterPro Domains
    IPR012936 Endoplasmic reticulum vesicle transporter, C-terminal
    IPR039542 Endoplasmic reticulum vesicle transporter, N-terminal
Molecular
Reagents
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  • All nucleic 149
    cDNA 147
    Primer pair 1
    Other 1

    Microarray probesets 6
Other
Accession IDs
less
MGD-MRK-6181, MGI:2139267, MGI:92308
References
more
  • Summaries
    All 37
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 5
  • Earliest
    J:15567 Warden CH, et al., Linkage mapping of 40 randomly isolated liver cDNA clones in the mouse. Genomics. 1993 Nov;18(2):295-307
  • Latest
    J:193641 Nakano Y, et al., A mutation in the Srrm4 gene causes alternative splicing defects and deafness in the Bronx waltzer mouse. PLoS Genet. 2012;8(10):e1002966

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory