About   Help   FAQ
Ccdc90b
Gene Detail
Symbol

Name
ID
Ccdc90b
coiled-coil domain containing 90B
MGI:1913615
Synonyms
2310015N07Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 7
51.51 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr7:92561149-92582294 bp, + strand
From VEGA annotation of GRCm38

  21146 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:23328  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: CCDC90B
Gene Tree: Ccdc90b

Human
homologs
CCDC90B, coiled-coil domain containing 90B
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 60492
neXtProt AC: NX_Q9GZT6

Human Synonyms: MDS011, MDS025

Human Chr (Location): 11q14.1; chr11:83259093-83286407 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(2) Targeted(3)
Incidental mutations (data from CvDC )
Interactions
Ccdc90b interacts with 101 markers (Mir1b, Mir15a, Mir15b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process biological_process
Component integral component of membrane, membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(10)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase ccdc90b    NEW 
Molecular
reagents
All nucleic(10) cDNA(10)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000031425 (Evidence)
Ensembl Gene Model ENSMUSG00000030613 (Evidence)
Entrez Gene 66365 (Evidence)
DFCI TC1586772, TC1579343
DoTS DT.99843116, DT.94251168, DT.55175236, DT.530407
NIA Mouse Gene Index U008373
Consensus CDS Project CCDS21449.1, CCDS52309.1
International Mouse Phenotyping Consortium Status Ccdc90b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031425 VEGA Gene Model | MGI Sequence Detail 21146 C57BL/6J ±  kb
transcript OTTMUST00000077861 VEGA | MGI Sequence Detail 1596 Not Applicable 
polypeptide OTTMUSP00000041274 VEGA | MGI Sequence Detail 256 Not Applicable 

For the selected sequences
All sequences(37) RefSeq(6) UniProt(1)
Polymorphisms
SNPs within 2kb(149 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR024461 Protein of unknown function DUF1640
Protein Ontology PR:000029322 coiled-coil domain-containing protein 90B, mitochondrial
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(30)
Other
accession IDs
MGI:2142368

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
06/23/2015
MGI 5.22
The Jackson Laboratory