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Ccdc90b
Gene Detail
 Symbol
Name
ID
Ccdc90b
coiled-coil domain containing 90B
MGI:1913615
Synonyms 2310015N07Rik
Feature Type protein coding gene
Genetic Map
Chromosome 7
51.51 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr7:92561149-92582294 bp, + strand
From VEGA annotation of GRCm38

  21146 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:23328  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Ccdc90b

Human
homologs
Human Homolog CCDC90B, coiled-coil domain containing 90B
NCBI Gene ID 60492
neXtProt AC  NX_Q9GZT6
Human Synonyms  MDS011, MDS025
Human Chr (Location)  11q14.1; chr11:83259093-83286407 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(2) Targeted(3)
Interactions
Ccdc90b interacts with 101 markers (Mir1b, Mir15a, Mir15b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process biological_process
Component integral component of membrane, membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(10)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(10) cDNA(10)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000031425 (Evidence)
Ensembl Gene ModelENSMUSG00000030613 (Evidence)
Entrez Gene66365 (Evidence)
DFCITC1579343, TC1586772
DoTSDT.530407, DT.55175236, DT.94251168, DT.99843116
NIA Mouse Gene IndexU008373
Consensus CDS ProjectCCDS21449.1, CCDS52309.1
International Mouse Knockout Project StatusCcdc90b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031425 VEGA Gene Model | MGI Sequence Detail 21146 C57BL/6J ±  kb
transcript OTTMUST00000077861 VEGA | MGI Sequence Detail 1596 Not Applicable 
polypeptide OTTMUSP00000041274 VEGA | MGI Sequence Detail 256 Not Applicable 

For the selected sequences
All sequences(37) RefSeq(6) UniProt(1)
Polymorphisms SNPs within 2kb(149 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR024461 Protein of unknown function DUF1640
Protein Ontology PR:000029322 coiled-coil domain-containing protein 90B, mitochondrial
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(32)
Other
accession IDs
MGI:2142368

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory