Ccdc90b MGI Mouse Gene Detail - MGI:1913615 - coiled-coil domain containing 90B

Symbol

Ccdc90b
Name

coiled-coil domain containing 90B
Synonyms

2310015N07Rik

Feature Type

protein coding gene
IDs

MGI:1913615
NCBI Gene: 66365
Alliance

genome feature page
Transcription Start Sites

3 TSS

Sequence Map

Chr7:92210357-92231502 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 7, 51.51 cM
Mapping Data

2 experiments

SNPs within 2kb

588 from dbSNP Build 142
Strain Annotations

19

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913615	protein coding gene	Chr7:92210350-92231502 (+)
129S1/SvImJ	ENSMUSG00200027176	protein coding gene	Chr7:78994713-79019768 (+)
A/J	ENSMUSG00195038700	protein coding gene	Chr7:83498209-83523382 (+)
AKR/J	ENSMUSG00220042201	protein coding gene	Chr7:76968216-76993363 (+)
BALB/cJ	ENSMUSG00180036945	protein coding gene	Chr7:80168972-80194143 (+)
C3H/HeJ	ENSMUSG00175020870	protein coding gene	Chr7:80880290-80905760 (+)
C57BL/6NJ	ENSMUSG00215021227	protein coding gene	Chr7:80050029-80075605 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0029989	protein coding gene	Chr7:95542285-95561865 (+)
CAST/EiJ	ENSTCUG00005029328	protein coding gene	Chr7:83473105-83493820 (+)
CBA/J	ENSMUSG00210038425	protein coding gene	Chr7:80722133-80747603 (+)
DBA/2J	ENSMUSG00185031138	protein coding gene	Chr7:85051914-85077384 (+)
FVB/NJ	ENSMUSG00205031599	protein coding gene	Chr7:80671590-80696774 (+)
JF1/MsJ	ENSUMUG00000013209	protein coding gene	Chr7:90008772-90028278 (+)
LP/J	ENSMUSG00230042403	protein coding gene	Chr7:91140939-91166409 (+)
NOD/ShiLtJ	ENSMUSG00190026462	protein coding gene	Chr7:80920142-80945288 (+)
NZO/HlLtJ	ENSMUSG00225010996	protein coding gene	Chr7:89415991-89441461 (+)
PWK/PhJ	ENSLUMG00010036398	protein coding gene	Chr7:79215947-79238067 (+)
SPRET/EiJ	ENSMSPG00010011542	protein coding gene	Chr7:80325056-80346299 (+)
WSB/EiJ	ENSIUOG00005008177	protein coding gene	Chr7:81358929-81385365 (+)

Human Ortholog

CCDC90B, coiled-coil domain containing 90B

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

CCDC90B, coiled-coil domain containing 90B
Synonyms

MDS011, MDS025
Links

HGNC:28108

NCBI Gene ID: 60492

UniProt: Q9GZT6
Chr Location

11q14.1; chr11:83259081-83286390 (-) GRCh38

MGI Vertebrate Homology

Ccdc90b stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: CCDC90B
Gene Tree

Ccdc90b

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Phenotype Summary

1 phenotype from 1 allele in 1 genetic background
32 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

12
Chemically induced (other)

1
Endonuclease-mediated

4
Gene trapped

2
Radiation induced

2
Targeted

3
Genomic Mutations

3 involving Ccdc90b
Incidental Mutations

CvDC
Find Mice (IMSR)

14 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

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All GO Annotations

6
GO References

6

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

599
Tissues

2
cDNA Data

11
Literature Summary

1

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

GEISHA CCDC90B

Xenbase ccdc90b

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All Sequences

45
RefSeq

8
UniProt

1
CCDS

CCDS21449.1, CCDS52309.1

Ensembl

ENSMUSG00000030613 (Evidence)
NCBI Gene

66365

			Length	Strain/Species	Flank
genomic	ENSMUSG00000030613	Ensembl Gene Model \| MGI Sequence Detail	21146	C57BL/6J	± kb
transcript	ENSMUST00000032842	Ensembl \| MGI Sequence Detail	1596	Not Applicable
polypeptide	ENSMUSP00000032842	Ensembl \| MGI Sequence Detail	256	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000029322 coiled-coil domain-containing protein 90B, mitochondrial

(term hierarchy)
InterPro Domains

IPR024461 Coiled-coil domain-containing protein 90-like

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All nucleic 11

cDNA 11

Microarray probesets 4

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MGI:2142368

Summaries

All 59

Developmental Gene Expression 1

Gene Ontology 6

Phenotypes 32
Earliest

J:141526 Russell LB, et al., Analysis of the albino-locus region of the mouse. III. Time of death of prenatal lethals. Genetics. 1979 May;92(1):205-13
Latest

J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;

TSS for Ccdc90b:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67858	Chr7:92210349-92210418 (+)	27 bp
Tssr67859	Chr7:92210692-92210745 (+)	362 bp
Tssr67860	Chr7:92210750-92210761 (+)	399 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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