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Snw1 Gene Detail
Summary
  • Symbol
    Snw1
  • Name
    SNW domain containing 1
  • Synonyms
    2310008B08Rik, NCoA-62, Skiip, SKIP, SNW1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913604
    NCBI Gene: 66354
  • Gene Overview
    MyGene.info: SNW1
Location & Maps
more
  • Sequence Map
    Chr12:87449936-87472299 bp, - strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      22364 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 41.67 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SNW1, SNW domain containing 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SNW1, SNW domain containing 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    Bx42, NCOA-62, Prp45, PRPF45, SKIIP, SKIP
  • Links
    NCBI Gene ID: 22938
    neXtProt AC: NX_Q13573

  • Chr Location
    14q24.3; chr14:77717599-77761218 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 56557
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: SNW1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    27
  • Chemically induced (other)
    1
  • Gene trapped
    25
  • Targeted
    1
  • Genomic Mutations
    1 involving Snw1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021039 Ensembl Gene Model | MGI Sequence Detail 22364 C57BL/6J ±  kb
transcript ENSMUST00000021428 Ensembl | MGI Sequence Detail 2231 Not Applicable  
polypeptide ENSMUSP00000021428 Ensembl | MGI Sequence Detail 536 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    112 from dbSNP Build 142
Protein
Information
less
  • UniProt
    5 Sequences
  • Protein Ontology
    PR:000015357 SNW domain-containing protein 1
  • InterPro Domains
    IPR017862 SKI-interacting protein, SKIP
    IPR004015 SKI-interacting protein SKIP, SNW domain
Molecular
Reagents
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  • All nucleic 12
    cDNA 10
    Primer pair 1
    Other 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:2144995
References
more
  • Summaries
    All 34
    Developmental Gene Expression 4
    Gene Ontology 8
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:178918 Rajan S, et al., Analysis of early C2C12 myogenesis identifies stably and differentially expressed transcriptional regulators whose knock-down inhibits myoblast differentiation. Physiol Genomics. 2011 Dec 6;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory