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Snw1 Gene Detail
Summary
  • Symbol
    Snw1
  • Name
    SNW domain containing 1
  • Synonyms
    2310008B08Rik, NCoA-62, Skiip, SKIP, SNW1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913604
    NCBI Gene: 66354
  • Gene Overview
    MyGene.info: SNW1
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:87449910-87472299 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 41.67 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    112 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913604
protein coding gene Chr12:87449075-87472299 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019989
protein coding gene Chr12:88367478-88391447 (-)
A/J MGP_AJ_G0019947
protein coding gene Chr12:85003041-85026249 (-)
AKR/J MGP_AKRJ_G0019922
protein coding gene Chr12:87305662-87327916 (-)
BALB/cJ MGP_BALBcJ_G0019926
protein coding gene Chr12:85343623-85365871 (-)
C3H/HeJ MGP_C3HHeJ_G0019732
protein coding gene Chr12:87797936-87820601 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020378
protein coding gene Chr12:90903934-90925937 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017996
protein coding gene Chr12:81885002-81907400 (-)
CAST/EiJ MGP_CASTEiJ_G0019282
protein coding gene Chr12:82844762-82866623 (-)
CBA/J MGP_CBAJ_G0019704
protein coding gene Chr12:94363624-94390257 (-)
DBA/2J MGP_DBA2J_G0019817
protein coding gene Chr12:84504774-84527758 (-)
FVB/NJ MGP_FVBNJ_G0019804
protein coding gene Chr12:83493043-83515624 (-)
LP/J MGP_LPJ_G0019891
protein coding gene Chr12:88237073-88259921 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019843
protein coding gene Chr12:97144249-97166939 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020410
protein coding gene Chr12:86937808-86962533 (-)
PWK/PhJ MGP_PWKPhJ_G0019046
protein coding gene Chr12:79062179-79085092 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018841
protein coding gene Chr12:81447633-81471565 (-)
WSB/EiJ MGP_WSBEiJ_G0019335
protein coding gene Chr12:87717552-87740758 (-)



Homology
more
  • Human Ortholog
    SNW1, SNW domain containing 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SNW1, SNW domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    Bx42, FUN20, NCOA-62, Prp45, PRPF45, SKIIP, SKIP, SKIP1
  • Links
    NCBI Gene ID: 22938
    neXtProt AC: NX_Q13573
    UniProt: Q13573

  • Chr Location
    14q24.3; chr14:77717599-77761220 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 56557
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SNW1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 66354 NCBI Gene Model | MGI Sequence Detail 22390 C57BL/6J ±  kb
transcript NM_025507 RefSeq | MGI Sequence Detail 2257 C57BL/6  
polypeptide Q9CSN1 UniProt | EBI | MGI Sequence Detail 536 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR017862 SKI-interacting protein, SKIP
    IPR004015 SKI-interacting protein SKIP, SNW domain
Molecular
Reagents
less
  • All nucleic 14
    cDNA 12
    Primer pair 1
    Other 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:2144995
References
more
  • Summaries
    All 37
    Developmental Gene Expression 4
    Gene Ontology 8
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:178918 Rajan S, et al., Analysis of early C2C12 myogenesis identifies stably and differentially expressed transcriptional regulators whose knock-down inhibits myoblast differentiation. Physiol Genomics. 2012 Feb 1;44(2):183-97

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory