About   Help   FAQ
Atp6v1c1 Gene Detail
Summary
  • Symbol
    Atp6v1c1
  • Name
    ATPase, H+ transporting, lysosomal V1 subunit C1
  • Synonyms
    1700025B18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913585
    NCBI Gene: 66335
  • Gene Overview
    MyGene.info: ATP6V1C1
Location & Maps
more
  • Sequence Map
    Chr15:38661904-38692443 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      30540 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 15.18 cM, cytoband C
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    ATP6V1C1, ATPase H+ transporting V1 subunit C1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ATP6V1C1, ATPase H+ transporting V1 subunit C1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ATP6C, ATP6D, VATC, Vma5
  • Links
    NCBI Gene ID: 528
    neXtProt AC: NX_P21283

  • Chr Location
    8q22.3; chr8:103021020-103073057 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
  • All Mutations and Alleles
    16
  • Chemically induced (other)
    2
  • Gene trapped
    12
  • Targeted
    2
  • Genomic Mutations
    2 involving Atp6v1c1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022295 Ensembl Gene Model | MGI Sequence Detail 30540 C57BL/6J ±  kb
transcript ENSMUST00000022904 Ensembl | MGI Sequence Detail 2097 Not Applicable  
polypeptide ENSMUSP00000022904 Ensembl | MGI Sequence Detail 382 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    254 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 12
    Primer pair 1

    Microarray probesets 6
Other
Accession IDs
less
MGI:2146327
References
more
  • Summaries
    All 35
    Developmental Gene Expression 4
    Gene Ontology 7
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:208278 De Arras L, et al., Comparative Genomics RNAi Screen Identifies Eftud2 as a Novel Regulator of Innate Immunity. Genetics. 2013 Dec 20;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/29/2016
MGI 6.06
The Jackson Laboratory