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Krt88 Gene Detail
Summary
  • Symbol
    Krt88
  • Name
    keratin 88
  • Synonyms
    1700011A15Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913572
    NCBI Gene: 66322
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:101447744-101453907 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 56.90 cM, cytoband F3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    25 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913572
 protein coding gene Chr15:101447740-101453925 (.)
129S1/SvImJ MGP_129S1SvImJ_G0022373
 protein coding gene Chr15:103515921-103522319 (+)
A/J MGP_AJ_G0022335
 protein coding gene Chr15:99416572-99422734 (+)
AKR/J MGP_AKRJ_G0022311
 protein coding gene Chr15:102445746-102451906 (+)
BALB/cJ MGP_BALBcJ_G0022339
 protein coding gene Chr15:99520698-99526856 (+)
C3H/HeJ MGP_C3HHeJ_G0022108
 protein coding gene Chr15:102530510-102536668 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022787
 protein coding gene Chr15:107374556-107380716 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020312
 protein coding gene Chr15:95144531-95150732 (+)
CAST/EiJ MGP_CASTEiJ_G0021634
 protein coding gene Chr15:103399377-103408647 (+)
CBA/J MGP_CBAJ_G0022078
 protein coding gene Chr15:111095771-111102157 (+)
DBA/2J MGP_DBA2J_G0022205
 protein coding gene Chr15:98751313-98757469 (+)
FVB/NJ MGP_FVBNJ_G0022184
 protein coding gene Chr15:97802625-97808781 (+)
LP/J MGP_LPJ_G0022276
 protein coding gene Chr15:103656769-103662915 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022205
 protein coding gene Chr15:114769040-114775196 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022801
 protein coding gene Chr15:102484549-102490861 (+)
PWK/PhJ MGP_PWKPhJ_G0021373
 protein coding gene Chr15:98909890-98916457 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021205
 protein coding gene Chr15:102374402-102380458 (+)
WSB/EiJ MGP_WSBEiJ_G0021683
 protein coding gene Chr15:103114255-103120633 (+)



Homology
more
  • Human Ortholog
    KRT88P, keratin 88 pseudogene
  • Vertebrate Orthologs
    4
  • Human Ortholog
    KRT88P, keratin 88 pseudogene
    Orthology source: HGNC
  • Synonyms
    HBC, KRT122P, KRTHBP3
  • Links
    NCBI Gene ID: 85348

  • Chr Location
    12q13.13; chr12:52263781-52268497 (+)  GRCh38.p7
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    27 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Radiation induced
    2
  • Targeted
    3
  • Genomic Mutations
    4 involving Krt88
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    5 strains or lines available
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
    11
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000063971 Ensembl Gene Model | MGI Sequence Detail 6164 C57BL/6J ±  kb
transcript ENSMUST00000023781 Ensembl | MGI Sequence Detail 902 Not Applicable  
polypeptide ENSMUSP00000023781 Ensembl | MGI Sequence Detail 171 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR001664 Intermediate filament protein
    IPR018039 Intermediate filament protein, conserved site
    IPR039008 Intermediate filament, rod domain
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 2
References
more
  • Summaries
    All 43
    Diseases 1
    Phenotypes 27
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/06/2018
MGI 6.13 		The Jackson Laboratory