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Krt88 Gene Detail
Summary
  • Symbol
    Krt88
  • Name
    keratin 88
  • Synonyms
    1700011A15Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913572
    NCBI Gene: 66322
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:101447744-101453907 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 56.90 cM, cytoband F3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    25 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913572
 protein coding gene Chr15:101447724-101453925 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022373
 protein coding gene Chr15:103515921-103522319 (+)
A/J MGP_AJ_G0022335
 protein coding gene Chr15:99416572-99422734 (+)
AKR/J MGP_AKRJ_G0022311
 protein coding gene Chr15:102445746-102451906 (+)
BALB/cJ MGP_BALBcJ_G0022339
 protein coding gene Chr15:99520698-99526856 (+)
C3H/HeJ MGP_C3HHeJ_G0022108
 protein coding gene Chr15:102530510-102536668 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022787
 protein coding gene Chr15:107374556-107380716 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020312
 protein coding gene Chr15:95144531-95150732 (+)
CAST/EiJ MGP_CASTEiJ_G0021634
 protein coding gene Chr15:103399377-103408647 (+)
CBA/J MGP_CBAJ_G0022078
 protein coding gene Chr15:111095771-111102157 (+)
DBA/2J MGP_DBA2J_G0022205
 protein coding gene Chr15:98751313-98757469 (+)
FVB/NJ MGP_FVBNJ_G0022184
 protein coding gene Chr15:97802625-97808781 (+)
LP/J MGP_LPJ_G0022276
 protein coding gene Chr15:103656769-103662915 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022205
 protein coding gene Chr15:114769040-114775196 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022801
 protein coding gene Chr15:102484549-102490861 (+)
PWK/PhJ MGP_PWKPhJ_G0021373
 protein coding gene Chr15:98909890-98916457 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021205
 protein coding gene Chr15:102374402-102380458 (+)
WSB/EiJ MGP_WSBEiJ_G0021683
 protein coding gene Chr15:103114255-103120633 (+)



Homology
more
  • Human Ortholog
    KRT88P, keratin 88 pseudogene
  • Vertebrate Orthologs
    4
  • Human Ortholog
    KRT88P, keratin 88 pseudogene
    Orthology source: HGNC
  • Synonyms
    HBC, KRT122P, KRTHBP3
  • Links
    NCBI Gene ID: 85348

  • Chr Location
    12q13.13; chr12:52263781-52268497 (+)  GRCh38.p7
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    29 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    631
  • cDNA Data
    11
  • Comparison Matrix
    Gene Expression + Phenotype
    • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000063971 Ensembl Gene Model | MGI Sequence Detail 6164 C57BL/6J ±  kb
    transcript ENSMUST00000023781 Ensembl | MGI Sequence Detail 902 Not Applicable  
    polypeptide ENSMUSP00000023781 Ensembl | MGI Sequence Detail 171 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      1 Sequence
    • InterPro Domains
      IPR018039 Intermediate filament protein, conserved site
      IPR039008 Intermediate filament, rod domain
    Molecular
    Reagents
    less
    • All nucleic 11
      cDNA 11

      Microarray probesets 2
    References
    more
    • Summaries
      All 45
      Diseases 1
      Phenotypes 29
    • Earliest
      J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
    • Latest
      J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer & Copyright Notice
    Send questions and comments to User Support.     		last database update
    02/16/2021
    MGI 6.16     		The Jackson Laboratory