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Dpy30
Gene Detail
Symbol

Name
ID
Dpy30
dpy-30 homolog (C. elegans)
MGI:1913560
Synonyms
2810410M20Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 17
45.64 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr17:74299474-74323944 bp, - strand
From NCBI annotation of GRCm38

  24471 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:32582  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: DPY30
Gene Tree: Dpy30

Human
homologs
DPY30, dpy-30 homolog (C. elegans)
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 84661
neXtProt AC: NX_Q9C005

Human Synonyms: Cps25, HDPY-30, Saf19

Human Chr (Location): 2p22.3; chr2:32021080-32039840 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(147) : Gene trapped(145) Targeted(2)
Incidental mutations (data from APF )
Interactions
Dpy30 interacts with 77 markers (Mir7-1, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process chromatin modification, endosomal transport, ...
Component Golgi apparatus, histone methyltransferase complex, ...
Function identical protein binding, protein homodimerization activity
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (122)    Tissues (16)    Images (23)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 122
cDNA source data(82)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase dpy30 ; ZFIN dpy30    NEW 
Molecular
reagents
All nucleic(82) cDNA(82)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000024067 (Evidence)
Entrez Gene 66310 (Evidence)
UniGene 28536
DFCI TC1575027, TC1591976, TC1671343
DoTS DT.494942, DT.101706135, DT.101386361
NIA Mouse Gene Index U038053
Consensus CDS Project CCDS28970.1
International Mouse Phenotyping Consortium Status Dpy30
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 66310 NCBI Gene Model | MGI Sequence Detail 24471 C57BL/6J ±  kb
transcript NM_024428 RefSeq | MGI Sequence Detail 799 C57BL/6 
polypeptide Q99LT0 UniProt | EBI | MGI Sequence Detail 99 Not Applicable 

For the selected sequences
All sequences(37) RefSeq(8) UniProt(2)
Polymorphisms
SNPs within 2kb(142 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007858 Dpy-30 motif
Protein Ontology PR:000006677 protein dpy-30
Graphical View of Protein Domain Structure
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(37)
Other
accession IDs
MGI:2147150

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory