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Dpy30 Gene Detail
Summary
  • Symbol
    Dpy30
  • Name
    dpy-30, histone methyltransferase complex regulatory subunit
  • Synonyms
    2810410M20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913560
    NCBI Gene: 66310
  • Alliance
    gene page
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:74299474-74323944 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 45.64 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    141 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913560
 protein coding gene Chr17:74299474-74323944 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024026
 protein coding gene Chr17:76920268-76935021 (-)
A/J MGP_AJ_G0023983
 protein coding gene Chr17:74568540-74585775 (-)
AKR/J MGP_AKRJ_G0023952
 protein coding gene Chr17:75634536-75651637 (-)
BALB/cJ MGP_BALBcJ_G0023985
 protein coding gene Chr17:74473637-74490490 (-)
C3H/HeJ MGP_C3HHeJ_G0023749
 protein coding gene Chr17:76571213-76587844 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024430
 protein coding gene Chr17:79674877-79692008 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021874
 protein coding gene Chr17:70217099-70230937 (-)
CAST/EiJ MGP_CASTEiJ_G0023229
 protein coding gene Chr17:77070899-77088948 (-)
CBA/J MGP_CBAJ_G0023723
 protein coding gene Chr17:83027111-83045930 (-)
DBA/2J MGP_DBA2J_G0023852
 protein coding gene Chr17:73166427-73183184 (-)
FVB/NJ MGP_FVBNJ_G0023818
 protein coding gene Chr17:72659414-72676186 (-)
LP/J MGP_LPJ_G0023935
 protein coding gene Chr17:77687349-77707350 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023846
 protein coding gene Chr17:82833368-82855853 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024474
 protein coding gene Chr17:76113938-76131032 (-)
PWK/PhJ MGP_PWKPhJ_G0022975
 protein coding gene Chr17:72535472-72551043 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022786
 protein coding gene Chr17:72804950-72825912 (-)
WSB/EiJ MGP_WSBEiJ_G0023296
 protein coding gene Chr17:76981009-77003468 (-)



Homology
more
  • Human Ortholog
    DPY30, dpy-30 histone methyltransferase complex regulatory subunit
  • Vertebrate Orthologs
    10
  • Human Ortholog
    DPY30, dpy-30 histone methyltransferase complex regulatory subunit
    Orthology source: HomoloGene, HGNC
  • Synonyms
    Cps25, HDPY-30, Saf19
  • Links
    NCBI Gene ID: 84661
    neXtProt AC: NX_Q9C005
    UniProt: Q9C005

  • Chr Location
    2p22.3; chr2:32011649-32039840 (-)  GRCh38.p7
  • HomoloGene
    Vertebrate Homology Class 32582
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: DPY30
  • Gene Tree
    Dpy30
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotypes from 1 allele in 1 genetic background
    16 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Embryos homozygous for a knock-out allele die between E7.5 and E9.5 exhibiting abnormal post-implantation development associated with absence of the primitive streak and impaired gastrulation of the pluripotent epiblast.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    14
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    759
  • Tissues
    17
  • cDNA Data
    84
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 66310 NCBI Gene Model | MGI Sequence Detail 24471 C57BL/6J ±  kb
    transcript NM_024428 RefSeq | MGI Sequence Detail 799 C57BL/6  
    polypeptide Q99LT0 UniProt | EBI | MGI Sequence Detail 99 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 85
      cDNA 84
      Primer pair 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2147150
    References
    more
    • Summaries
      All 43
      Developmental Gene Expression 4
      Gene Ontology 4
      Phenotypes 16
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:284608 Campbell SA, et al., TrxG Complex Catalytic and Non-catalytic Activity Play Distinct Roles in Pancreas Progenitor Specification and Differentiation. Cell Rep. 2019 Aug 13;28(7):1830-1844.e6
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    05/26/2020
    MGI 6.15     		The Jackson Laboratory