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Smim8 Gene Detail
Summary
  • Symbol
    Smim8
  • Name
    small integral membrane protein 8
  • Synonyms
    1810030N24Rik, 2810406B13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913541
    NCBI Gene: 66291
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:34768664-34778396 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 16.86 cM, cytoband A5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    74 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913541
protein coding gene Chr4:34768664-34778423 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028132
protein coding gene Chr4:32363703-32373459 (-)
A/J MGP_AJ_G0028090
protein coding gene Chr4:31196903-31206736 (-)
AKR/J MGP_AKRJ_G0028053
protein coding gene Chr4:32011842-32021657 (-)
BALB/cJ MGP_BALBcJ_G0028101
protein coding gene Chr4:31465449-31475208 (-)
C3H/HeJ MGP_C3HHeJ_G0027830
protein coding gene Chr4:32323478-32333426 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028543
protein coding gene Chr4:33595675-33605454 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025884
protein coding gene Chr4:29293038-29303078 (-)
CAST/EiJ MGP_CASTEiJ_G0027285
protein coding gene Chr4:32120480-32133729 (-)
CBA/J MGP_CBAJ_G0027802
protein coding gene Chr4:34691223-34701038 (-)
DBA/2J MGP_DBA2J_G0027946
protein coding gene Chr4:31167496-31177833 (-)
FVB/NJ MGP_FVBNJ_G0027912
protein coding gene Chr4:30583851-30594035 (-)
LP/J MGP_LPJ_G0028054
protein coding gene Chr4:32450724-32460482 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027945
protein coding gene Chr4:37288514-37299178 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028602
protein coding gene Chr4:32035796-32045534 (-)
PWK/PhJ MGP_PWKPhJ_G0027004
protein coding gene Chr4:31195763-31205447 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026833
protein coding gene Chr4:31901285-31912260 (-)
WSB/EiJ MGP_WSBEiJ_G0027361
protein coding gene Chr4:32032038-32043484 (-)



Homology
more
  • Human Ortholog
    SMIM8, small integral membrane protein 8
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SMIM8, small integral membrane protein 8
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C6orf162, dJ102H19.2
  • Links
    NCBI Gene ID: 57150
    neXtProt AC: NX_Q96KF7
    UniProt: Q96KF7

  • Chr Location
    6q15; chr6:87322588-87342328 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 10708
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SMIM8
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66291 NCBI Gene Model | MGI Sequence Detail 9733 C57BL/6J ±  kb
transcript NM_025471 RefSeq | MGI Sequence Detail 974 C57BL/6  
polypeptide Q9CQQ0 UniProt | EBI | MGI Sequence Detail 97 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR026686 UPF0708 protein C6orf162
Molecular
Reagents
less
  • All nucleic 43
    cDNA 43

    Microarray probesets 3
Other
Accession IDs
less
MGI:1917441
References
more
  • Summaries
    All 31
    Gene Ontology 1
    Phenotypes 11
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory