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Smim8 Gene Detail
Summary
  • Symbol
    Smim8
  • Name
    small integral membrane protein 8
  • Synonyms
    1810030N24Rik, 2810406B13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913541
    NCBI Gene: 66291
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:34768664-34778396 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 16.86 cM, cytoband A5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    74 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913541
protein coding gene Chr4:34768664-34778423 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028132
protein coding gene Chr4:32363703-32373459 (-)
A/J MGP_AJ_G0028090
protein coding gene Chr4:31196903-31206736 (-)
AKR/J MGP_AKRJ_G0028053
protein coding gene Chr4:32011842-32021657 (-)
BALB/cJ MGP_BALBcJ_G0028101
protein coding gene Chr4:31465449-31475208 (-)
C3H/HeJ MGP_C3HHeJ_G0027830
protein coding gene Chr4:32323478-32333426 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028543
protein coding gene Chr4:33595675-33605454 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025884
protein coding gene Chr4:29293038-29303078 (-)
CAST/EiJ MGP_CASTEiJ_G0027285
protein coding gene Chr4:32120480-32133729 (-)
CBA/J MGP_CBAJ_G0027802
protein coding gene Chr4:34691223-34701038 (-)
DBA/2J MGP_DBA2J_G0027946
protein coding gene Chr4:31167496-31177833 (-)
FVB/NJ MGP_FVBNJ_G0027912
protein coding gene Chr4:30583851-30594035 (-)
LP/J MGP_LPJ_G0028054
protein coding gene Chr4:32450724-32460482 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027945
protein coding gene Chr4:37288514-37299178 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028602
protein coding gene Chr4:32035796-32045534 (-)
PWK/PhJ MGP_PWKPhJ_G0027004
protein coding gene Chr4:31195763-31205447 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026833
protein coding gene Chr4:31901285-31912260 (-)
WSB/EiJ MGP_WSBEiJ_G0027361
protein coding gene Chr4:32032038-32043484 (-)



Homology
more
  • Human Ortholog
    SMIM8, small integral membrane protein 8
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SMIM8, small integral membrane protein 8
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C6orf162, dJ102H19.2
  • Links
    NCBI Gene ID: 57150
    neXtProt AC: NX_Q96KF7
    UniProt: Q96KF7

  • Chr Location
    6q15; chr6:87322588-87342328 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 10708
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SMIM8
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 66291 NCBI Gene Model | MGI Sequence Detail 9733 C57BL/6J ±  kb
    transcript NM_025471 RefSeq | MGI Sequence Detail 974 C57BL/6  
    polypeptide Q9CQQ0 UniProt | EBI | MGI Sequence Detail 97 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      1 Sequence
    • InterPro Domains
      IPR026686 UPF0708 protein C6orf162
    Molecular
    Reagents
    less
    • All nucleic 43
      cDNA 43

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1917441
    References
    more
    • Summaries
      All 31
      Gene Ontology 1
      Phenotypes 11
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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    Funding Information
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    last database update
    11/10/2020
    MGI 6.16
    The Jackson Laboratory