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Ccdc28b
Gene Detail
 Symbol
Name
ID
Ccdc28b
coiled coil domain containing 28B
MGI:1913514
Synonyms 1110002E08Rik, 1810010N17Rik
Feature Type protein coding gene
Genetic Map
Chromosome 4
63.26 cM, cytoband D2.3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:129619274-129623947 bp, - strand
From VEGA annotation of GRCm38

  4674 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11509  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Ccdc28b

Human
homologs
Human Homolog CCDC28B, coiled-coil domain containing 28B
NCBI Gene ID 79140
neXtProt AC  NX_Q9BUN5
Human Chr (Location)  1p36.11-p34.2; chr1:32200386-32205390 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human CCDC28B
Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(3) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ccdc28b interacts with 52 markers (Mir10b, Mir15a, Mir15b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process cell projection organization, cilium assembly
Component centrosome, cytoplasm, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (92)    Tissues (12)    Images (22)
Theiler Stages: 23
Assay TypeResults
RNA in situ 92
cDNA source data(8)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(8) cDNA(8)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000009526 (Evidence)
Ensembl Gene ModelENSMUSG00000028795 (Evidence)
Entrez Gene66264 (Evidence)
NIA Mouse Gene IndexU025563
Consensus CDS ProjectCCDS18700.1
International Mouse Knockout Project StatusCcdc28b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000009526 VEGA Gene Model | MGI Sequence Detail 4674 C57BL/6J ±  kb
transcript OTTMUST00000021798 VEGA | MGI Sequence Detail 821 Not Applicable 
polypeptide OTTMUSP00000009944 VEGA | MGI Sequence Detail 205 Not Applicable 

For the selected sequences
All sequences(56) RefSeq(7) UniProt(6)
Polymorphisms SNPs within 2kb(92 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR025271 Domain of unknown function DUF4061
Protein Ontology PR:000032594 coiled-coil domain-containing protein 28B
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(27)
Other
accession IDs
MGI:1921087

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory