About   Help   FAQ
Ccdc28b Gene Detail
Summary
  • Symbol
    Ccdc28b
  • Name
    coiled coil domain containing 28B
  • Synonyms
    1110002E08Rik, 1810010N17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913514
    NCBI Gene: 66264
  • Gene Overview
    MyGene.info: CCDC28B
Location & Maps
more
  • Sequence Map
    Chr4:129619274-129623947 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      4674 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 63.26 cM, cytoband D2.3
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    CCDC28B, coiled-coil domain containing 28B
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CCDC28B, coiled-coil domain containing 28B
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 79140
    neXtProt AC: NX_Q9BUN5

  • Chr Location
    1p36.11-p34.2; chr1:32200386-32205390 (+)  GRCh38.p2

Human Diseases
more
  • Diseases
    1 with human CCDC28B associations

Human Disease Mouse Models
       Bardet-Biedl Syndrome 1; BBS1   OMIM: 209900
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
  • All Mutations and Alleles
    9
  • Chemically induced (other)
    2
  • Gene trapped
    3
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    4 involving Ccdc28b
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000009526 VEGA Gene Model | MGI Sequence Detail 4674 C57BL/6J ±  kb
transcript OTTMUST00000021798 VEGA | MGI Sequence Detail 821 Not Applicable  
polypeptide OTTMUSP00000009944 VEGA | MGI Sequence Detail 205 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    91 from dbSNP Build 142
Protein
Information
less
  • UniProt
    6 Sequences
  • Protein Ontology
    PR:000032594 coiled-coil domain-containing protein 28B
  • InterPro Domains
    IPR025271 Domain of unknown function DUF4061
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 5
Other
Accession IDs
less
MGI:1921087
References
more
  • Summaries
    All 26
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
07/19/2016
MGI 6.04
The Jackson Laboratory