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Ccdc28b Gene Detail
Summary
  • Symbol
    Ccdc28b
  • Name
    coiled coil domain containing 28B
  • Synonyms
    1110002E08Rik, 1810010N17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913514
    NCBI Gene: 66264
  • Gene Overview
    MyGene.info: CCDC28B
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:129619274-129623908 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 63.26 cM, cytoband D2.3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    90 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913514
protein coding gene Chr4:129619274-129623947 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028834
protein coding gene Chr4:131557040-131561513 (-)
A/J MGP_AJ_G0028793
protein coding gene Chr4:126296493-126300986 (-)
AKR/J MGP_AKRJ_G0028746
protein coding gene Chr4:129819705-129824186 (-)
BALB/cJ MGP_BALBcJ_G0028816
protein coding gene Chr4:126904087-126908582 (-)
C3H/HeJ MGP_C3HHeJ_G0028530
protein coding gene Chr4:129872920-129877397 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029258
protein coding gene Chr4:136501926-136506671 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026530
protein coding gene Chr4:119426791-119431258 (-)
CAST/EiJ MGP_CASTEiJ_G0027962
protein coding gene Chr4:128062472-128066945 (-)
CBA/J MGP_CBAJ_G0028496
protein coding gene Chr4:139896811-139901302 (-)
DBA/2J MGP_DBA2J_G0028645
protein coding gene Chr4:126732751-126737230 (-)
FVB/NJ MGP_FVBNJ_G0028612
protein coding gene Chr4:125489216-125493685 (-)
LP/J MGP_LPJ_G0028746
protein coding gene Chr4:131837814-131842287 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028638
protein coding gene Chr4:144703065-144707534 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029296
protein coding gene Chr4:130189066-130193559 (-)
PWK/PhJ MGP_PWKPhJ_G0027684
protein coding gene Chr4:123333036-123337769 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027510
protein coding gene Chr4:126056977-126061490 (-)
WSB/EiJ MGP_WSBEiJ_G0028043
protein coding gene Chr4:130316200-130320673 (-)



Homology
more
  • Human Ortholog
    CCDC28B, coiled-coil domain containing 28B
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CCDC28B, coiled-coil domain containing 28B
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 79140
    neXtProt AC: NX_Q9BUN5
    UniProt: Q9BUN5

  • Chr Location
    1p35.2; chr1:32200386-32205390 (+)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human CCDC28B associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66264 NCBI Gene Model | MGI Sequence Detail 4635 C57BL/6J ±  kb
transcript NM_025455 RefSeq | MGI Sequence Detail 856 C57BL/6  
polypeptide Q8CEG5 UniProt | EBI | MGI Sequence Detail 200 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 5
Other
Accession IDs
less
MGI:1921087
References
more
  • Summaries
    All 33
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory