Ssr2 MGI Mouse Gene Detail - MGI:1913506 - signal sequence receptor, beta

Symbol

Ssr2
Name

signal sequence receptor, beta
Synonyms

TRAPbeta

Feature Type

protein coding gene
IDs

MGI:1913506
NCBI Gene: 66256
Gene Overview

MyGene.info: SSR2
Alliance

gene page
Transcription Start Sites

8 TSS

Sequence Map

Chr3:88579584-88588420 bp, + strand
From NCBI annotation of GRCm38

View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 3, 38.88 cM
Mapping Data

2 experiments

SNPs within 2kb

35 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913506	protein coding gene	Chr3:88575876-88588420 (.)
129S1/SvImJ	MGP_129S1SvImJ_G0027403	protein coding gene	Chr3:88745719-88763016 (+)
A/J	MGP_AJ_G0027367	protein coding gene	Chr3:85751975-85766474 (+)
AKR/J	MGP_AKRJ_G0027331	protein coding gene	Chr3:87865760-87881012 (+)
BALB/cJ	MGP_BALBcJ_G0027376	protein coding gene	Chr3:85837229-85851831 (+)
C3H/HeJ	MGP_C3HHeJ_G0027118	protein coding gene	Chr3:88123084-88140583 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0027822	protein coding gene	Chr3:92048831-92061935 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025174	protein coding gene	Chr3:81353758-81369167 (+)
CAST/EiJ	MGP_CASTEiJ_G0026564	protein coding gene	Chr3:88367433-88374729 (+)
CBA/J	MGP_CBAJ_G0027092	protein coding gene	Chr3:95214958-95235931 (+)
DBA/2J	MGP_DBA2J_G0027230	protein coding gene	Chr3:85235576-85248741 (+)
FVB/NJ	MGP_FVBNJ_G0027198	protein coding gene	Chr3:83509070-83517529 (+)
LP/J	MGP_LPJ_G0027339	protein coding gene	Chr3:89757823-89774709 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0027218	protein coding gene	Chr3:101424872-101440786 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0027881	protein coding gene	Chr3:87614368-87627311 (+)
PWK/PhJ	MGP_PWKPhJ_G0026298	protein coding gene	Chr3:85014837-85030717 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0026117	protein coding gene	Chr3:86799870-86812147 (+)
WSB/EiJ	MGP_WSBEiJ_G0026646	protein coding gene	Chr3:87970424-87984460 (+)

Human Ortholog

SSR2, signal sequence receptor subunit 2

Vertebrate Orthologs

10

Human Ortholog

SSR2, signal sequence receptor subunit 2
Orthology source: HomoloGene, HGNC
Synonyms

HSD25, TLAP, TRAPB, TRAP-BETA
Links

HGNC:11324

NCBI Gene ID: 6746

neXtProt AC: NX_P43308

UniProt: P43308
Chr Location

1q22; chr1:156009048-156020992 (-) GRCh38.p7

HomoloGene

Vertebrate Homology Class 2369
1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
HCOP

human homology predictions: SSR2
Protein SuperFamily

translocon-associated protein, beta subunit
Gene Tree

Ssr2

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References

1 with disease annotations

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Phenotype Summary

42 phenotypes from 1 allele in 1 genetic background
18 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	immune system	integument	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	neoplasm	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	vision/eye

Click cells to view annotations.

All Mutations and Alleles

209
Chemically induced (other)

1
Gene trapped

203
Radiation induced

1
Targeted

4
Genomic Mutations

2 involving Ssr2
Find Mice (IMSR)

63 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

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All GO Annotations

5
GO References

4

External Resources

FuncBase

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell death	cell differentiation	cell proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	nucleic acid-templated transcription	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

47
Tissues

24
cDNA Data

246
Literature Summary

5

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase ssr2

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Ssr2 interacts with 62 markers (Mir22, Mir23a, Mir23b, ...) View All

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All Sequences

69
RefSeq

10
UniProt

6
CCDS

CCDS17480.1
UniGene

7091

Ensembl

ENSMUSG00000041355 (Evidence)
NCBI Gene

66256

			Length	Strain/Species	Flank
genomic	66256	NCBI Gene Model \| MGI Sequence Detail	8837	C57BL/6J	± kb
transcript	NM_025448	RefSeq \| MGI Sequence Detail	1253	C57BL/6
polypeptide	Q9CPW5	UniProt \| EBI \| MGI Sequence Detail	183	Not Applicable

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UniProt

6 Sequences
InterPro Domains

IPR008856 Translocon-associated protein subunit beta

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All nucleic 248

cDNA 246

Primer pair 1

Other 1

Microarray probesets 3

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MGI:2139666, MGI:2139881

Summaries

All 48

Developmental Gene Expression 5

Diseases 1

Gene Ontology 4

Phenotypes 18
Earliest

J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
Latest

J:261316 Perez-Garcia V, et al., Placentation defects are highly prevalent in embryonic lethal mouse mutants. Nature. 2018 Mar 22;555(7697):463-468

TSS for Ssr2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29967	Chr3:88575759-88575770 (+)	-3,819 bp
Tssr29968	Chr3:88575795-88575810 (+)	-3,781 bp
Tssr29969	Chr3:88575825-88575852 (+)	-3,745 bp
Tssr29970	Chr3:88575893-88575934 (+)	-3,670 bp
Tssr29973	Chr3:88579602-88579727 (+)	81 bp
Tssr29974	Chr3:88579857-88579864 (+)	277 bp
Tssr29975	Chr3:88583765-88583783 (+)	4,190 bp
Tssr29976	Chr3:88586888-88586901 (+)	7,311 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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