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Ssr2
Gene Detail
Symbol

Name
ID
Ssr2
signal sequence receptor, beta
MGI:1913506
Synonyms
TRAPbeta
Feature Type
protein coding gene
Genetic Map
Chromosome 3
38.88 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:88579583-88588420 bp, + strand
From NCBI annotation of GRCm38

  8838 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:2369  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: translocon-associated protein, beta subunit
Gene Tree: Ssr2

Human
homologs
Human Homolog SSR2, signal sequence receptor, beta (translocon-associated protein beta)
NCBI Gene ID 6746
neXtProt AC  NX_P43308
Human Synonyms  TLAP, TRAPB, TRAP-BETA
Human Chr (Location)  1q21-q23; chr1:156009048-156020967 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(206) : Gene trapped(203) Targeted(3)
Interactions
Ssr2 interacts with 62 markers (Mir22, Mir23a, Mir23b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process biological_process
Component endoplasmic reticulum, integral component of membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (47)    Tissues (24)    Images (17)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 43
RT-PCR 4
cDNA source data(245)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(247) cDNA(245) Primer pair(1) Other(1)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000041355 (Evidence)
Entrez Gene66256 (Evidence)
UniGene7091
DFCITC1571883
DoTSDT.495760, DT.101403188
NIA Mouse Gene IndexU003442
Consensus CDS ProjectCCDS17480.1
International Mouse Knockout Project StatusSsr2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 66256 NCBI Gene Model | MGI Sequence Detail 8838 C57BL/6J ±  kb
transcript NM_025448 RefSeq | MGI Sequence Detail 1183 C57BL/6 
polypeptide Q9CPW5 UniProt | EBI | MGI Sequence Detail 183 Not Applicable 

For the selected sequences
All sequences(43) RefSeq(4) UniProt(1)
Polymorphisms
SNPs within 2kb(35 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008856 Translocon-associated protein subunit beta
Protein Ontology PR:000015660 translocon-associated protein subunit beta
Graphical View of Protein Domain Structure
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(42)
Other
accession IDs
MGI:2139666, MGI:2139881

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory