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Sssca1 Gene Detail
Summary
  • Symbol
    Sssca1
  • Name
    Sjogren syndrome/scleroderma autoantigen 1
  • Synonyms
    1500016H19Rik, Sjogren's syndrome/scleroderma autoantigen 1 homolog (human)
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913482
    NCBI Gene: 56390
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:5730306-5731732 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 4.34 cM, cytoband A
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    11 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913482
protein coding gene Chr19:5728088-5731732 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024726
protein coding gene Chr19:2713935-2717579 (-)
A/J MGP_AJ_G0024692
protein coding gene Chr19:2568130-2571773 (-)
AKR/J MGP_AKRJ_G0024665
protein coding gene Chr19:2636831-2640474 (-)
BALB/cJ MGP_BALBcJ_G0024692
protein coding gene Chr19:2563247-2566890 (-)
C3H/HeJ MGP_C3HHeJ_G0024460
protein coding gene Chr19:2651888-2655531 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025139
protein coding gene Chr19:2784367-2788011 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022569
protein coding gene Chr19:2477704-2481332 (-)
CAST/EiJ MGP_CASTEiJ_G0023931
protein coding gene Chr19:2671676-2675326 (-)
CBA/J MGP_CBAJ_G0024432
protein coding gene Chr19:2912213-2915857 (-)
DBA/2J MGP_DBA2J_G0024559
protein coding gene Chr19:2563475-2567119 (-)
FVB/NJ MGP_FVBNJ_G0024525
protein coding gene Chr19:2560544-2564187 (-)
LP/J MGP_LPJ_G0024645
protein coding gene Chr19:2688960-2692604 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024555
protein coding gene Chr19:2750141-2753784 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025187
protein coding gene Chr19:2653887-2657531 (-)
PWK/PhJ MGP_PWKPhJ_G0023677
protein coding gene Chr19:2587069-2590717 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023483
protein coding gene Chr19:2642177-2643602 (-)
WSB/EiJ MGP_WSBEiJ_G0023993
protein coding gene Chr19:2664959-2668609 (-)



Homology
more
  • Human Ortholog
    SSSCA1, Sjogren syndrome/scleroderma autoantigen 1
  • Vertebrate Orthologs
    8
  • Human Ortholog
    SSSCA1, Sjogren syndrome/scleroderma autoantigen 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    p27
  • Links
    NCBI Gene ID: 10534
    neXtProt AC: NX_O60232
    UniProt: O60232

  • Chr Location
    11q13.1; chr11:65570459-65571888 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 56390 NCBI Gene Model | MGI Sequence Detail 1427 C57BL/6J ±  kb
transcript NM_020491 RefSeq | MGI Sequence Detail 719 C57BL/6  
polypeptide P56873 UniProt | EBI | MGI Sequence Detail 199 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 70
    cDNA 70

    Microarray probesets 4
References
more
  • Summaries
    All 28
    Developmental Gene Expression 3
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:57923 Sakuma-Takagi M, et al., Novel related cDNAs (C184L, C184M, and C184S) from developing mouse brain encoding two apparently unrelated proteins. Biochem Biophys Res Commun. 1999 Oct 5;263(3):737-42
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory