About   Help   FAQ
Bsdc1 Gene Detail
Summary
  • Symbol
    Bsdc1
  • Name
    BSD domain containing 1
  • Synonyms
    1110063F24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913466
    NCBI Gene: 100383
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:129461679-129488498 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 63.26 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    255 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913466
protein coding gene Chr4:129461581-129488498 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028823
protein coding gene Chr4:131385325-131411847 (+)
A/J MGP_AJ_G0028782
protein coding gene Chr4:126139663-126167112 (+)
AKR/J MGP_AKRJ_G0028735
protein coding gene Chr4:129645863-129673165 (+)
BALB/cJ MGP_BALBcJ_G0028805
protein coding gene Chr4:126731886-126762308 (+)
C3H/HeJ MGP_C3HHeJ_G0028519
protein coding gene Chr4:129706926-129737663 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029247
protein coding gene Chr4:136326459-136355126 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026520
protein coding gene Chr4:119272816-119297990 (+)
CAST/EiJ MGP_CASTEiJ_G0027952
protein coding gene Chr4:127884596-127911687 (+)
CBA/J MGP_CBAJ_G0028485
protein coding gene Chr4:139700978-139727733 (+)
DBA/2J MGP_DBA2J_G0028634
protein coding gene Chr4:126572368-126599196 (+)
FVB/NJ MGP_FVBNJ_G0028601
protein coding gene Chr4:125332003-125360075 (+)
LP/J MGP_LPJ_G0028735
protein coding gene Chr4:131662566-131689068 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028627
protein coding gene Chr4:144541750-144569563 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029285
protein coding gene Chr4:130023132-130051229 (+)
PWK/PhJ MGP_PWKPhJ_G0027673
protein coding gene Chr4:123166024-123194240 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027500
protein coding gene Chr4:125887945-125917091 (+)
WSB/EiJ MGP_WSBEiJ_G0028032
protein coding gene Chr4:130143794-130170214 (+)



Homology
more
  • Human Ortholog
    BSDC1, BSD domain containing 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    BSDC1, BSD domain containing 1
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 55108
    neXtProt AC: NX_Q9NW68
    UniProt: Q9NW68

  • Chr Location
    1p35.1; chr1:32364633-32394461 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 32386
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: BSDC1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    16 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 100383 NCBI Gene Model | MGI Sequence Detail 26820 C57BL/6J ±  kb
transcript NM_133889 RefSeq | MGI Sequence Detail 2684 C57BL/6  
polypeptide Q80Y55 UniProt | EBI | MGI Sequence Detail 427 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 90
    cDNA 90

    Microarray probesets 4
Other
Accession IDs
less
MGI:2140541
References
more
  • Summaries
    All 37
    Phenotypes 16
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
05/19/2020
MGI 6.15
The Jackson Laboratory