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Lce1m Gene Detail
Summary
  • Symbol
    Lce1m
  • Name
    late cornified envelope 1M
  • Synonyms
    1110059L13Rik, Lce5a, Sprrl10
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913453
    NCBI Gene: 66203
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:93017810-93019060 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 40.14 cM, cytoband F2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    30 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913453
protein coding gene Chr3:93017807-93019061 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027529
protein coding gene Chr3:93495388-93496614 (-)
A/J MGP_AJ_G0027493
protein coding gene Chr3:90577342-90578568 (-)
AKR/J MGP_AKRJ_G0027461
protein coding gene Chr3:92677416-92678666 (-)
BALB/cJ MGP_BALBcJ_G0027502
protein coding gene Chr3:90361171-90362484 (-)
C3H/HeJ MGP_C3HHeJ_G0027241
protein coding gene Chr3:92891928-92893154 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027945
protein coding gene Chr3:97055154-97056404 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025294
protein coding gene Chr3:87182437-87183771 (-)
CAST/EiJ MGP_CASTEiJ_G0026689
protein coding gene Chr3:92323263-92324459 (-)
CBA/J MGP_CBAJ_G0027216
protein coding gene Chr3:100392904-100394130 (-)
DBA/2J MGP_DBA2J_G0027354
protein coding gene Chr3:89896391-89897641 (-)
FVB/NJ MGP_FVBNJ_G0027323
protein coding gene Chr3:88033736-88035049 (-)
LP/J MGP_LPJ_G0027463
protein coding gene Chr3:94728677-94729903 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027347
protein coding gene Chr3:106680859-106682172 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028004
protein coding gene Chr3:92419622-92420884 (-)
PWK/PhJ MGP_PWKPhJ_G0026417
protein coding gene Chr3:89768234-89769486 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026237
protein coding gene Chr3:90760848-90762098 (-)
WSB/EiJ MGP_WSBEiJ_G0026771
protein coding gene Chr3:92793505-92794767 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    2 involving Lce1m
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027912 Ensembl Gene Model | MGI Sequence Detail 1251 C57BL/6J ±  kb
transcript ENSMUST00000029520 Ensembl | MGI Sequence Detail 874 Not Applicable  
polypeptide ENSMUSP00000029520 Ensembl | MGI Sequence Detail 182 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR028205 Late cornified envelope protein
    IPR026075 Small proline-rich protein/late cornified envelope protein
Molecular
Reagents
less
  • All nucleic 17
    cDNA 17

    Microarray probesets 3
Other
Accession IDs
less
MGI:2139631
References
more
  • Summaries
    All 33
    Developmental Gene Expression 2
    Diseases 1
    Gene Ontology 1
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/04/2019
MGI 6.14
The Jackson Laboratory