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Rps4l Pseudogene Detail
Summary
  • Symbol
    Rps4l
  • Name
    ribosomal protein S4-like
  • Synonyms
    1110033J19Rik, Rps4y2
  • Feature Type
    pseudogene
  • IDs
    MGI:1913434
    NCBI Gene: 66184
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:148354656-148355596 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 78.49 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    14 from dbSNP Build 142
  • Strain Annotations
    2
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913434
pseudogene Chr6:148354656-148355598 (+)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0040275
pseudogene Chr6:157501058-157502000 (+)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic 66184 NCBI Gene Model | MGI Sequence Detail 941 C57BL/6J ±  kb
transcript NR_003634 RefSeq | MGI Sequence Detail 941 C57BL/6  
polypeptide Q3V1Z5 UniProt | EBI | MGI Sequence Detail 262 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR032277 40S ribosomal protein S4, C-terminal domain
    IPR014722 Ribosomal protein L2, domain 2
    IPR000876 Ribosomal protein S4e
    IPR038237 Ribosomal protein S4e, central domain superfamily
    IPR013845 Ribosomal protein S4e, central region
    IPR013843 Ribosomal protein S4e, N-terminal
    IPR018199 Ribosomal protein S4e, N-terminal, conserved site
    IPR041982 Ribosomal protein S4, KOW domain
    IPR002942 RNA-binding S4 domain
Molecular
Reagents
less
  • All nucleic 73
    cDNA 73

    Microarray probesets 4
Other
Accession IDs
less
MGI:1889335
References
more
  • Summaries
    All 20
    Developmental Gene Expression 1
    Gene Ontology 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:197929 Sugihara Y, et al., Identification and expression of an autosomal paralogue of ribosomal protein S4, X-linked, in mice: potential involvement of testis-specific ribosomal proteins in translation and spermatogenesis. Gene. 2013 May 25;521(1):91-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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Funding Information
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last database update
01/07/2020
MGI 6.14
The Jackson Laboratory