About   Help   FAQ
Nip7 Gene Detail
Summary
  • Symbol
    Nip7
  • Name
    NIP7, nucleolar pre-rRNA processing protein
  • Synonyms
    1110017C15Rik, 6330509M23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913414
    NCBI Gene: 66164
  • Gene Overview
    MyGene.info: NIP7
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:107056877-107060931 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 53.57 cM, cytoband D2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    50 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913414
protein coding gene Chr8:107056877-107060931 (.)
129S1/SvImJ MGP_129S1SvImJ_G0034095
protein coding gene Chr8:109469651-109475994 (+)
A/J MGP_AJ_G0034075
protein coding gene Chr8:105080097-105084353 (+)
AKR/J MGP_AKRJ_G0034001
protein coding gene Chr8:108146505-108150774 (+)
BALB/cJ MGP_BALBcJ_G0034068
protein coding gene Chr8:105279854-105284098 (+)
C3H/HeJ MGP_C3HHeJ_G0033780
protein coding gene Chr8:108869795-108874976 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034588
protein coding gene Chr8:113463584-113467633 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031530
protein coding gene Chr8:98185857-98188948 (+)
CAST/EiJ MGP_CASTEiJ_G0033107
protein coding gene Chr8:108396925-108399887 (+)
CBA/J MGP_CBAJ_G0033753
protein coding gene Chr8:117144166-117150114 (+)
DBA/2J MGP_DBA2J_G0033908
protein coding gene Chr8:104409347-104413603 (+)
FVB/NJ MGP_FVBNJ_G0033853
protein coding gene Chr8:103350122-103354528 (+)
LP/J MGP_LPJ_G0033999
protein coding gene Chr8:109652352-109656610 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033898
protein coding gene Chr8:120256586-120261718 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034606
protein coding gene Chr8:108074310-108078622 (+)
PWK/PhJ MGP_PWKPhJ_G0032808
protein coding gene Chr8:103832125-103835091 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032648
protein coding gene Chr8:106789152-106792150 (+)
WSB/EiJ MGP_WSBEiJ_G0033222
protein coding gene Chr8:108795323-108799372 (+)



Homology
more
  • Human Ortholog
    NIP7, NIP7, nucleolar pre-rRNA processing protein
  • Vertebrate Orthologs
    10
  • Human Ortholog
    NIP7, NIP7, nucleolar pre-rRNA processing protein
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CGI-37, HSPC031, KD93
  • Links
    NCBI Gene ID: 51388
    neXtProt AC: NX_Q9Y221
    UniProt: Q9Y221

  • Chr Location
    16q22.1; chr16:69339512-69343111 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for en ENU-induced allele exhibit embryonic lethality.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 66164 NCBI Gene Model | MGI Sequence Detail 4055 C57BL/6J ±  kb
    transcript NR_028367 RefSeq | MGI Sequence Detail 3129 C57BL/6  
    polypeptide Q9CXK8 UniProt | EBI | MGI Sequence Detail 180 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 110
      cDNA 110

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1923405, MGI:2142407, MGI:2142421
    References
    more
    • Summaries
      All 33
      Developmental Gene Expression 2
      Gene Ontology 5
      Phenotypes 8
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
    Warranty Disclaimer & Copyright Notice
    Send questions and comments to User Support.
    last database update
    11/13/2018
    MGI 6.13
    The Jackson Laboratory