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Znrd1 Gene Detail
Summary
  • Symbol
    Znrd1
  • Name
    zinc ribbon domain containing, 1
  • Synonyms
    1110014N07Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913386
    NCBI Gene: 66136
  • Gene Overview
    MyGene.info: ZNRD1
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:36954349-36958520 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 19.16 cM, cytoband B3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913386
protein coding gene Chr17:36954349-36958559 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023689
protein coding gene Chr17:37310337-37315879 (-)
A/J MGP_AJ_G0023647
protein coding gene Chr17:36133623-36138581 (-)
AKR/J MGP_AKRJ_G0023618
protein coding gene Chr17:36568472-36572473 (-)
BALB/cJ MGP_BALBcJ_G0023654
protein coding gene Chr17:36376302-36380634 (-)
C3H/HeJ MGP_C3HHeJ_G0023416
protein coding gene Chr17:37083150-37087113 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024092
protein coding gene Chr17:38905040-38909078 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021560
protein coding gene Chr17:33949153-33953422 (-)
CAST/EiJ MGP_CASTEiJ_G0022901
protein coding gene Chr17:37214150-37218195 (-)
CBA/J MGP_CBAJ_G0023393
protein coding gene Chr17:40423110-40427308 (-)
DBA/2J MGP_DBA2J_G0023518
protein coding gene Chr17:35526278-35530842 (-)
FVB/NJ MGP_FVBNJ_G0023491
protein coding gene Chr17:35134760-35138757 (-)
LP/J MGP_LPJ_G0023596
protein coding gene Chr17:37840163-37846150 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023514
protein coding gene Chr17:39217751-39221958 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024137
protein coding gene Chr17:36908368-36913810 (-)
PWK/PhJ MGP_PWKPhJ_G0022653
protein coding gene Chr17:34304797-34309308 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022472
protein coding gene Chr17:34994146-35000101 (-)
WSB/EiJ MGP_WSBEiJ_G0022968
protein coding gene Chr17:37227640-37234216 (-)



Homology
more
  • Human Ortholog
    ZNRD1, zinc ribbon domain containing 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    ZNRD1, zinc ribbon domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HTEX6, HTEX-6, hZR14, Rpa12, tctex-6, TCTEX6, TEX6, ZR14
  • Links
    NCBI Gene ID: 30834
    neXtProt AC: NX_Q9P1U0
    UniProt: Q9P1U0

  • Chr Location
    6p22.1; chr6:30061240-30064909 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 66136 NCBI Gene Model | MGI Sequence Detail 4172 C57BL/6J ±  kb
transcript NM_001355422 RefSeq | MGI Sequence Detail 702 C57BL/6  
polypeptide Q791N7 UniProt | EBI | MGI Sequence Detail 123 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000018205 DNA-directed RNA polymerase I subunit RPA12
  • InterPro Domains
    IPR019761 DNA-directed RNA polymerase M, 15kDa subunit, conserved site
    IPR012164 DNA-directed RNA polymerase subunit/transcription factor S
    IPR034004 Pol I subunit A12, C-terminal zinc ribbon
    IPR001222 Zinc finger, TFIIS-type
Molecular
Reagents
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  • All nucleic 52
    cDNA 50
    Primer pair 2

    Microarray probesets 4
References
more
  • Summaries
    All 34
    Developmental Gene Expression 4
    Gene Ontology 4
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory