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Sf3b5 Gene Detail
Summary
  • Symbol
    Sf3b5
  • Name
    splicing factor 3b, subunit 5
  • Synonyms
    10kDa, 1110005L13Rik, Sf3b10
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913375
    NCBI Gene: 66125
  • Gene Overview
    MyGene.info: SF3B5
Location & Maps
more
  • Sequence Map
    Chr10:13005343-13009183 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      3841 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 4.72 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SF3B5, splicing factor 3b subunit 5
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SF3B5, splicing factor 3b subunit 5
    Orthology source: HGNC, HomoloGene
  • Synonyms
    SF3b10, Ysf3
  • Links
    NCBI Gene ID: 83443
    neXtProt AC: NX_Q9BWJ5

  • Chr Location
    6q24.2; chr6:144094881-144095617 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
  • All Mutations and Alleles
    1
  • Targeted
    1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000042396 VEGA Gene Model | MGI Sequence Detail 3841 C57BL/6J ±  kb
transcript OTTMUST00000111744 VEGA | MGI Sequence Detail 3841 Not Applicable  
polypeptide OTTMUSP00000062622 VEGA | MGI Sequence Detail 86 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    118 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000014739 splicing factor 3B subunit 5
  • InterPro Domains
    IPR017089 Splicing factor 3B, subunit 5
    IPR009846 Splicing factor 3B subunit 5/RDS3 complex subunit 10
Molecular
Reagents
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  • All nucleic 7
    cDNA 7

    Microarray probesets 5
Other
Accession IDs
less
MGI:2143762
References
more
  • Summaries
    All 25
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 1
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory