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Sf3b5 Gene Detail
Summary
  • Symbol
    Sf3b5
  • Name
    splicing factor 3b, subunit 5
  • Synonyms
    10kDa, 1110005L13Rik, Sf3b10
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913375
    NCBI Gene: 66125
  • Gene Overview
    MyGene.info: SF3B5
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:13008450-13009183 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 4.72 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    82 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913375
protein coding gene Chr10:13005343-13009183 (.)
129S1/SvImJ MGP_129S1SvImJ_G0017017
protein coding gene Chr10:10390387-10394244 (+)
A/J MGP_AJ_G0016995
protein coding gene Chr10:9999255-10003083 (+)
AKR/J MGP_AKRJ_G0016959
protein coding gene Chr10:10231824-10235662 (+)
BALB/cJ MGP_BALBcJ_G0016953
protein coding gene Chr10:9999783-10003619 (+)
C3H/HeJ MGP_C3HHeJ_G0016778
protein coding gene Chr10:10388420-10392252 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017415
protein coding gene Chr10:10677519-10681363 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015120
protein coding gene Chr10:9277974-9280574 (+)
CAST/EiJ MGP_CASTEiJ_G0016360
protein coding gene Chr10:10241165-10245028 (+)
CBA/J MGP_CBAJ_G0016750
protein coding gene Chr10:11058265-11062093 (+)
DBA/2J MGP_DBA2J_G0016858
protein coding gene Chr10:9908193-9912042 (+)
FVB/NJ MGP_FVBNJ_G0016853
protein coding gene Chr10:9749653-9753498 (+)
LP/J MGP_LPJ_G0016933
protein coding gene Chr10:10250038-10253874 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016883
protein coding gene Chr10:10977232-10981080 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017453
protein coding gene Chr10:10115497-10119342 (+)
PWK/PhJ MGP_PWKPhJ_G0016145
protein coding gene Chr10:9789262-9793103 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015928
protein coding gene Chr10:10242276-10246152 (+)
WSB/EiJ MGP_WSBEiJ_G0016422
protein coding gene Chr10:10155933-10159777 (+)



Homology
more
  • Human Ortholog
    SF3B5, splicing factor 3b subunit 5
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SF3B5, splicing factor 3b subunit 5
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SF3b10, Ysf3
  • Links
    NCBI Gene ID: 83443
    neXtProt AC: NX_Q9BWJ5
    UniProt: Q9BWJ5

  • Chr Location
    6q24.2; chr6:144094881-144095617 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66125 NCBI Gene Model | MGI Sequence Detail 734 C57BL/6J ±  kb
transcript NM_175102 RefSeq | MGI Sequence Detail 750 C57BL/6  
polypeptide Q923D4 UniProt | EBI | MGI Sequence Detail 86 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 5
Other
Accession IDs
less
MGI:2143762
References
more
  • Summaries
    All 26
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 1
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory