About   Help   FAQ
Sarnp
Gene Detail
Symbol

Name
ID
Sarnp
SAP domain containing ribonucleoprotein
MGI:1913368
Synonyms
1110005A23Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 10
77.16 cM, cytoband C1
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr10:128821771-128877638 bp, + strand
From NCBI annotation of GRCm38

  55868 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:41628  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Sarnp

Human
homologs
Human Homolog SARNP, SAP domain containing ribonucleoprotein
NCBI Gene ID 84324
neXtProt AC  NX_P82979
Human Synonyms  CIP29, HCC1, HSPC316, THO1
Human Chr (Location)  12q13.2; chr12:55752463-55817756 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(54) : Gene trapped(51) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Sarnp interacts with 43 markers (Mir22, Mir130a, Mir130b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (20)    Tissues (20)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 12
RT-PCR 8
cDNA source data(12)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(14) cDNA(13) Primer pair(1)
Microarray probesets(5)
Other database
links
Ensembl Gene ModelENSMUSG00000078427 (Evidence)
Entrez Gene66118 (Evidence)
DFCITC1572485, TC1654321, TC1659055, TC1695671
DoTSDT.535601, DT.94294020, DT.94294029, DT.99858961, DT.99858962
Consensus CDS ProjectCCDS36092.1
International Mouse Knockout Project StatusSarnp
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 66118 NCBI Gene Model | MGI Sequence Detail 55868 C57BL/6J ±  kb
transcript NM_025364 RefSeq | MGI Sequence Detail 1064 Not Specified 
polypeptide NP_079640 RefSeq | MGI Sequence Detail 210 Not Specified 

For the selected sequences
All sequences(41) RefSeq(12)
Polymorphisms
SNPs within 2kb(329 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000008468 nuclear protein Hcc-1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:140465 Guo G, et al., Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst. Dev Cell. 2010 Apr 20;18(4):675-85
All references(35)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
10/08/2014
MGI 5.20
The Jackson Laboratory