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Sarnp
Gene Detail
Symbol

Name
ID
Sarnp
SAP domain containing ribonucleoprotein
MGI:1913368
Synonyms
1110005A23Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 10
77.16 cM, cytoband C1
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr10:128821771-128877638 bp, + strand
From Ensembl annotation of GRCm38

  55868 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:41628  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SARNP
Gene Tree: Sarnp

Human
homologs
SARNP, SAP domain containing ribonucleoprotein
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 84324
neXtProt AC: NX_P82979

Human Synonyms: CIP29, HCC1, HSPC316, THO1

Human Chr (Location): 12q13.2; chr12:55752463-55817756 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(54) : Gene trapped(51) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Sarnp interacts with 43 markers (Mir22, Mir130a, Mir130b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (20)    Tissues (20)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 12
RT-PCR 8
cDNA source data(12)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: GEISHA SARNP ; Xenbase sarnp ; ZFIN sarnp    NEW 
Molecular
reagents
All nucleic(14) cDNA(13) Primer pair(1)
Microarray probesets(5)
Other database
links
Ensembl Gene Model ENSMUSG00000078427 (Evidence)
Entrez Gene 66118 (Evidence)
DFCI TC1695671, TC1659055, TC1654321, TC1572485
DoTS DT.535601, DT.94294020, DT.99858961, DT.94294029, DT.99858962
NIA Mouse Gene Index U019298, U012202
Consensus CDS Project CCDS36092.1
International Mouse Phenotyping Consortium Status Sarnp
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000078427 Ensembl Gene Model | MGI Sequence Detail 55868 C57BL/6J ±  kb
transcript ENSMUST00000105230 Ensembl | MGI Sequence Detail 1062 Not Applicable 
polypeptide ENSMUSP00000100863 Ensembl | MGI Sequence Detail 210 Not Applicable 

For the selected sequences
All sequences(43) RefSeq(12)
Polymorphisms
SNPs within 2kb(329 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000008468 nuclear protein Hcc-1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:140465 Guo G, et al., Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst. Dev Cell. 2010 Apr 20;18(4):675-85
All references(35)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory